Rmu_sc0013657.1_g000009

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013657.1
OG0000551
Physical Location & Seq
Forward (+)
62164 .. 67057
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013657.1_g000009.1.cds

Sequence Viewer

Length: 615 bp
atggggggagcttgttctaggaagagaaaccatcgagatgatgacgataattttcctagagggatttccagaagatattcaaaaagtgtgagttcaaagtgcttggcaacctccttctctcgacctgctatagatattcaacatgaaaaagggcaatgcccatccctcatggacttctacgtacggcaaatacctgaggcgaggtctccggtcaactccgaccgaccgactatcaactccggtgggtctccggccgacctccggccaacttccggtgggtctctggcgaactccgcgctattatcactaacaccaaaagctactgtcgctagcaacaaaatctactctggtgagatttccggcaatctccggagtattaacagcagcaattttcactatcagacgacagtttttcactgttgtctgatcattttttggcatagtgtggaactcattggtcttgatggagtggaaggaagcgagccgtgcaggcggttcatcaagattgttggcgctagcggtgcccgttggcgaagccttttcttagcggaggttgttagcggaggtactagggaggctgctgccggttggcggaatggagcagaggttggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

204

Amino Acids

22.06

Weight (kDa)

9.32

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 6 cut(s) 294, 493, 519, 548, 561, 592
AcoI YGGCCR 2 cut(s) 252, 263
AfaI GTAC 2 cut(s) 183, 568
AfiI CCNNNNNNNGG 3 cut(s) 261, 272, 591
AgsI TTSAA 3 cut(s) 81, 96, 140
AluBI AGCT 2 cut(s) 11, 320
AluI AGCT 2 cut(s) 11, 320
Alw26I GTCTC 3 cut(s) 210, 252, 285
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 2 cut(s) 252, 263
ApeKI GCWGC 3 cut(s) 384, 578, 581
Asp700I GAANNNNTTC 1 cut(s) 76
AspLEI GCGC 2 cut(s) 298, 515
AsuHPI GGTGA 1 cut(s) 362
AsuNHI GCTAGC 2 cut(s) 329, 515
AxyI CCTNAGG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 526
BanI GGYRCC 1 cut(s) 521
BbvI GCAGC 3 cut(s) 396, 565, 568
BccI CCATC 3 cut(s) 39, 169, 458
BceAI ACGGC 2 cut(s) 200, 469
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 210, 252, 285
BfaI CTAG 6 cut(s) 18, 57, 330, 516, 570, 613
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 490
BisI GCNGC 3 cut(s) 385, 579, 582
BlsI GCNGC 3 cut(s) 386, 580, 583
BmiI GGNNCC 1 cut(s) 523
BmtI GCTAGC 2 cut(s) 333, 519
BsaAI YACGTR 1 cut(s) 181
BsaI GGTCTC 3 cut(s) 210, 252, 285
BsaWI WCCGGW 4 cut(s) 208, 239, 272, 369
BsaXI ACNNNNNCTCC 1 cut(s) 591
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 272, 591
Bse118I RCCGGY 1 cut(s) 584
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 369
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 261, 272, 591
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 526
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 3 cut(s) 396, 565, 568
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 3 cut(s) 223, 227, 255
BshFI GGCC 2 cut(s) 254, 265
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 3 cut(s) 223, 227, 255
BsiSI CCGG 8 cut(s) 209, 240, 251, 262, 273, 360, 370, 585
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 261, 272, 591
BsmAI GTCTC 3 cut(s) 210, 252, 285
BsnI GGCC 2 cut(s) 254, 265
Bso31I GGTCTC 3 cut(s) 210, 252, 285
Bsp1286I GDGCHC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 1 cut(s) 426
BspACI CCGC 6 cut(s) 294, 493, 519, 548, 561, 592
BspANI GGCC 2 cut(s) 254, 265
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 369
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 133
BspOI GCTAGC 2 cut(s) 333, 519
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 3 cut(s) 210, 252, 285
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 584
BssAI RCCGGY 1 cut(s) 584
BssMI GATC 1 cut(s) 426
Bst4CI ACNGT 3 cut(s) 325, 409, 419
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 4 cut(s) 331, 482, 491, 517
BstDEI CTNAG 2 cut(s) 195, 544
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 298, 515
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 3 cut(s) 210, 252, 285
BstMBI GATC 1 cut(s) 426
BstMCI CGRYCG 3 cut(s) 223, 227, 255
BstMWI GCNNNNNNNGC 5 cut(s) 293, 326, 486, 490, 521
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 526
BstSNI TACGTA 1 cut(s) 181
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 396, 565, 568
BstZI CGGCCG 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 254, 265
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 4 cut(s) 331, 482, 491, 517
CfoI GCGC 2 cut(s) 298, 515
Cfr10I RCCGGY 1 cut(s) 584
Csp6I GTAC 2 cut(s) 182, 567
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 2 cut(s) 143, 169
CviJI RGCY 8 cut(s) 11, 254, 265, 320, 484, 537, 578, 612
CviKI_1 RGCY 8 cut(s) 11, 254, 265, 320, 484, 537, 578, 612
CviQI GTAC 2 cut(s) 182, 567
DdeI CTNAG 2 cut(s) 195, 544
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
EaeI YGGCCR 2 cut(s) 252, 263
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 252
Eco105I TACGTA 1 cut(s) 181
Eco31I GGTCTC 3 cut(s) 210, 252, 285
Eco52I CGGCCG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 195
FaeI CATG 2 cut(s) 146, 172
FaiI YATR 4 cut(s) 131, 144, 170, 441
FatI CATG 2 cut(s) 142, 168
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 385, 579, 582
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 385, 579, 582
FspBI CTAG 6 cut(s) 18, 57, 330, 516, 570, 613
GlaI GCGC 2 cut(s) 297, 514
GluI GCNGC 3 cut(s) 385, 579, 582
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 2 cut(s) 254, 265
HapII CCGG 8 cut(s) 209, 240, 251, 262, 273, 360, 370, 585
HhaI GCGC 2 cut(s) 298, 515
Hin1II CATG 2 cut(s) 146, 172
Hin6I GCGC 2 cut(s) 296, 513
HinP1I GCGC 2 cut(s) 296, 513
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HpaII CCGG 8 cut(s) 209, 240, 251, 262, 273, 360, 370, 585
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 220, 402, 426
Hpy188III TCNNGA 6 cut(s) 35, 69, 120, 370, 461, 502
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 124, 467
HpyCH4III ACNGT 3 cut(s) 325, 409, 419
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 489
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 326, 486, 490, 521
HpyF3I CTNAG 2 cut(s) 195, 544
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 146, 172
HspAI GCGC 2 cut(s) 296, 513
Kpn2I TCCGGA 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 1 cut(s) 426
LmnI GCTCC 2 cut(s) 8, 599
Lsp1109I GCAGC 3 cut(s) 396, 565, 568
MaeI CTAG 6 cut(s) 18, 57, 330, 516, 570, 613
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 2 cut(s) 34, 84
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 2 cut(s) 49, 388
MmeI TCCRAC 1 cut(s) 243
MroI TCCGGA 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 8 cut(s) 209, 240, 251, 262, 273, 360, 370, 585
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 5 cut(s) 293, 326, 486, 490, 521
NdeII GATC 1 cut(s) 426
NheI GCTAGC 2 cut(s) 329, 515
NlaIII CATG 2 cut(s) 146, 172
NlaIV GGNNCC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 76
Pfl23II CGTACG 1 cut(s) 181
PkrI GCNGC 3 cut(s) 386, 580, 583
Ppu21I YACGTR 1 cut(s) 181
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 523
RsaI GTAC 2 cut(s) 183, 568
RsaNI GTAC 2 cut(s) 182, 567
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 3 cut(s) 385, 579, 582
Sau3AI GATC 1 cut(s) 426
SduI GDGCHC 1 cut(s) 526
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 181
Sse9I AATT 2 cut(s) 49, 388
SsiI CCGC 6 cut(s) 294, 493, 519, 548, 561, 592
SspMI CTAG 6 cut(s) 18, 57, 330, 516, 570, 613
TaaI ACNGT 3 cut(s) 325, 409, 419
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 34, 121
TaqII GACCGA 2 cut(s) 237, 241
TasI AATT 2 cut(s) 49, 388
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 422
TseI GCWGC 3 cut(s) 384, 578, 581
TspDTI ATGAA 2 cut(s) 159, 487
TspRI CASTG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 6 cut(s) 18, 57, 330, 516, 570, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.