Rh2DG392400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000551
Physical Location & Seq
Reverse (-)
57001059 .. 57011187
10129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG392400.1

Sequence Viewer

Length: 1236 bp
ATGGGGGGAGCTTGTTCTAGGAAGAGAAACCATAGAGATGATGAAGATAATTTTCCTAGAGGGATTTCCAGAAGATATTCCAAAAGTGGGAGTTCAAAGTGGTTGGCAACCTCCTTCTCTCGACCTGCTATAGATATTCAACATGACAAAGGGCAATGCCCATCCCTCATGGACTTGTGCGTACAGAAAATACGTGAGGACATTAATAAATATAGCACATTCTCTATGCTCCCAAGAGATATTAGTCAACAGATCATTAATGAGTTGGTGTACTCTGGATGCCTAACTGATGTTTCTTTTGAAGCTTTCCGGGATTGTGCTTTGCAGGATCTTTACTTGGGAGAATACCCTAATGTGAATGATACTTGGATGGATGTCATATCCTCACAAGGGTCATCTTTACTCTCGCTAGATCTCTCTGGTTCCGATGTTACTGACAGCGGGTTAATTTATCTCAAAGATTGCACAAATCTCCAAGCATTAAATTTTAATGATTGTGATGAGATATCAGATCAGGGGCTGGAACACATAAGTGGTCTATCTAACTTGACAAATTTGAGTTTTAGAAGAAATGGTGCAATTACTTCTCATGGAATGAGTGCCTTTGCTAATTTATTTGGCTTGATCAAGTTGGACTTGGAGAGATGCCCAGGGATCCATGGTGGACTTGTTCATCTTCAAGGTTTAACAAAATTAGAGTCTCTTAATATCAAATGGTGCAACTCCATAGCAGATGCTGACATGAAGCCTCTCTCAGGGCTTACAAATTTGAAAAGCATACAAATTTCCTGCAGTAAGGTTACTGATTCTGGCATTACTTATATGAAAGGTCTTCACAATCTTTCTCTTCTGAACTTGGAGGGATGCCTGGTAACTGCTGCATGTTTGGACTCTCTTTCAGCTCTTGATGCCCTGCTATATCTGAATCTGAGCCGATGTCATCTGACTGATGAAGGATGTGAGAAGTTTTCTCGATTTGGAAACTTAAAAGTACTAAACTTGGGGTTCAATGACATCACGGATGCCTGTCTAGTGCACTTAAAAGGTTTGACAAATTTGGAGAGTCTGAACCTGGATTCATGTAGAATTGGTGATGAAGGGCTGGTTAACTTGACAGGCCTTAAGCATCTGAAATGCCTGGAATTGTCAGATACTGAAGTTGGAAGCAATGGGCTCTGCCATTTGTCAGGTGATATGCTTCACTTTCACTCATGGTTCACAACCATACATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

411

Amino Acids

45.22

Weight (kDa)

5.41

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 150 - 204 9e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 226 - 289 7.2e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 290 - 371 1.1e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 307 - 363 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 441
AclWI GGATC 3 cut(s) 336, 649, 662
AcsI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
AcuI CTGAAG 1 cut(s) 1176
AfaI GTAC 3 cut(s) 183, 272, 993
AfiI CCNNNNNNNGG 3 cut(s) 87, 390, 755
AflII CTTAAG 1 cut(s) 1121
AgsI TTSAA 6 cut(s) 96, 140, 302, 680, 772, 1009
AjnI CCWGG 4 cut(s) 649, 867, 1071, 1137
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 3 cut(s) 11, 305, 902
AluI AGCT 3 cut(s) 11, 305, 902
Alw21I GWGCWC 1 cut(s) 1038
Alw26I GTCTC 1 cut(s) 705
Alw44I GTGCAC 1 cut(s) 1034
AlwI GGATC 3 cut(s) 336, 649, 662
AlwNI CAGNNNCTG 3 cut(s) 520, 737, 1154
AoxI GGCC 1 cut(s) 1117
ApaLI GTGCAC 1 cut(s) 1034
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AseI ATTAAT 2 cut(s) 204, 258
Asp700I GAANNNNTTC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 1103, 1202
BaeGI GKGCMC 1 cut(s) 1038
BaeI ACNNNNGTAYC 2 cut(s) 1143, 1176
BamHI GGATCC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 1038
BbvI GCAGC 1 cut(s) 865
BccI CCATC 2 cut(s) 169, 364
BciT130I CCWGG 4 cut(s) 651, 869, 1073, 1139
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 4 cut(s) 18, 57, 410, 1031
BfmI CTRYAG 2 cut(s) 129, 790
BfrI CTTAAG 1 cut(s) 1121
BfuAI ACCTGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 880
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 5 cut(s) 311, 651, 869, 1073, 1139
BmiI GGNNCC 2 cut(s) 424, 656
BmrFI CCNGG 5 cut(s) 311, 651, 869, 1073, 1139
BmsI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
BpiI GAAGAC 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 649, 650, 658
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 390, 755
Bse3DI GCAATG 2 cut(s) 161, 1174
BseBI CCWGG 4 cut(s) 651, 869, 1073, 1139
BseDI CCNNGG 3 cut(s) 649, 650, 658
BseGI GGATG 7 cut(s) 161, 284, 375, 379, 869, 962, 1027
BseLI CCNNNNNNNGG 3 cut(s) 87, 390, 755
BseMI GCAATG 2 cut(s) 161, 1174
BseMII CTCAG 2 cut(s) 768, 920
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 1 cut(s) 865
BshFI GGCC 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 1038
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 87, 390, 755
BsmAI GTCTC 1 cut(s) 705
BsnI GGCC 1 cut(s) 1119
Bsp1286I GDGCHC 2 cut(s) 1038, 1176
Bsp143I GATC 6 cut(s) 252, 328, 412, 511, 624, 654
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 1119
BspCNI CTCAG 2 cut(s) 767, 921
BspLI GGNNCC 2 cut(s) 424, 656
BspMAI CTGCAG 1 cut(s) 794
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 3 cut(s) 336, 649, 662
BspTI CTTAAG 1 cut(s) 1121
BsrDI GCAATG 2 cut(s) 161, 1174
BssECI CCNNGG 3 cut(s) 649, 650, 658
BssMI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 4 cut(s) 651, 869, 1073, 1139
Bst6I CTCTTC 2 cut(s) 17, 852
BstAFI CTTAAG 1 cut(s) 1121
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 754, 929
BstDSI CCRYGG 1 cut(s) 658
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 7 cut(s) 161, 284, 375, 379, 869, 962, 1027
BstKTI GATC 6 cut(s) 255, 331, 415, 514, 627, 657
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNI CCWGG 4 cut(s) 651, 869, 1073, 1139
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 5 cut(s) 309, 649, 867, 1071, 1137
BstSFI CTRYAG 2 cut(s) 129, 790
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 3 cut(s) 328, 412, 654
BstYI RGATCY 3 cut(s) 328, 412, 654
BsuRI GGCC 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 7 cut(s) 161, 284, 375, 379, 869, 962, 1027
BveI ACCTGC 1 cut(s) 133
CaiI CAGNNNCTG 3 cut(s) 520, 737, 1154
Csp6I GTAC 3 cut(s) 182, 271, 992
CviAII CATG 8 cut(s) 143, 169, 590, 659, 742, 882, 1080, 1212
CviQI GTAC 3 cut(s) 182, 271, 992
DdeI CTNAG 2 cut(s) 754, 929
DpnI GATC 6 cut(s) 254, 330, 414, 513, 626, 656
DpnII GATC 6 cut(s) 252, 328, 412, 511, 624, 654
Eam1104I CTCTTC 2 cut(s) 17, 852
EarI CTCTTC 2 cut(s) 17, 852
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 1 cut(s) 1119
Eco24I GRGCYC 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 1176
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoRII CCWGG 4 cut(s) 649, 867, 1071, 1137
EcoRV GATATC 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 1176
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 8 cut(s) 142, 168, 589, 658, 741, 881, 1079, 1211
FauI CCCGC 1 cut(s) 434
FbaI TGATCA 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 879
FokI GGATG 7 cut(s) 148, 291, 382, 386, 876, 969, 1034
FriOI GRGCYC 1 cut(s) 1176
Fsp4HI GCNGC 1 cut(s) 879
FspBI CTAG 4 cut(s) 18, 57, 410, 1031
GluI GCNGC 1 cut(s) 879
HaeIII GGCC 1 cut(s) 1119
HapII CCGG 1 cut(s) 310
Hin1II CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
HincII GTYRAC 2 cut(s) 248, 1108
HindII GTYRAC 2 cut(s) 248, 1108
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 6 cut(s) 698, 806, 890, 925, 1063, 1076
HpaI GTTAAC 1 cut(s) 1108
HpaII CCGG 1 cut(s) 310
HphI GGTGA 2 cut(s) 1103, 1202
Hpy166II GTNNAC 6 cut(s) 248, 271, 665, 1036, 1108, 1218
Hpy188I TCNGA 9 cut(s) 427, 511, 852, 924, 930, 945, 1068, 1131, 1150
Hpy188III TCNNGA 5 cut(s) 69, 120, 276, 905, 972
Hpy8I GTNNAC 6 cut(s) 248, 271, 665, 1036, 1108, 1218
HpyAV CCTTC 3 cut(s) 124, 947, 1091
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 7 cut(s) 325, 465, 578, 720, 792, 881, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 2 cut(s) 754, 929
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
Ksp22I TGATCA 1 cut(s) 624
KspAI GTTAAC 1 cut(s) 1108
Kzo9I GATC 6 cut(s) 252, 328, 412, 511, 624, 654
LmnI GCTCC 2 cut(s) 8, 234
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
MaeI CTAG 4 cut(s) 18, 57, 410, 1031
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 3 cut(s) 430, 799, 871
MalI GATC 6 cut(s) 254, 330, 414, 513, 626, 656
MboI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
MboII GAAGA 7 cut(s) 34, 56, 84, 579, 668, 824, 839
MflI RGATCY 3 cut(s) 328, 412, 654
MhlI GDGCHC 2 cut(s) 1038, 1176
MlyI GAGTC 3 cut(s) 707, 884, 1072
MmeI TCCRAC 2 cut(s) 612, 1141
MnlI CCTC 7 cut(s) 53, 121, 176, 190, 394, 759, 853
MroXI GAANNNNTTC 1 cut(s) 76
MslI CAYNNNNRTG 2 cut(s) 36, 531
MspA1I CMGCKG 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 5 cut(s) 311, 651, 869, 1073, 1139
MvaI CCWGG 4 cut(s) 651, 869, 1073, 1139
MwoI GCNNNNNNNGC 1 cut(s) 908
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 658
NdeII GATC 6 cut(s) 252, 328, 412, 511, 624, 654
NlaIII CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
NlaIV GGNNCC 2 cut(s) 424, 656
NspI RCATGY 1 cut(s) 885
OliI CACNNNNGTG 1 cut(s) 531
PasI CCCWGGG 1 cut(s) 650
PceI AGGCCT 1 cut(s) 1119
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 806, 925, 1076
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 880
PleI GAGTC 3 cut(s) 706, 884, 1071
PpsI GAGTC 3 cut(s) 706, 884, 1071
Ppu21I YACGTR 1 cut(s) 194
PshBI ATTAAT 2 cut(s) 204, 258
Psp6I CCWGG 4 cut(s) 649, 867, 1071, 1137
PspGI CCWGG 4 cut(s) 649, 867, 1071, 1137
PspN4I GGNNCC 2 cut(s) 424, 656
PstI CTGCAG 1 cut(s) 794
PstNI CAGNNNCTG 3 cut(s) 520, 737, 1154
PsuI RGATCY 3 cut(s) 328, 412, 654
RsaI GTAC 3 cut(s) 183, 272, 993
RsaNI GTAC 3 cut(s) 182, 271, 992
RseI CAYNNNNRTG 2 cut(s) 36, 531
SatI GCNGC 1 cut(s) 879
Sau3AI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 3 cut(s) 707, 884, 1072
ScrFI CCNGG 5 cut(s) 311, 651, 869, 1073, 1139
SduI GDGCHC 2 cut(s) 1038, 1176
SfaNI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
SfcI CTRYAG 2 cut(s) 129, 790
SmiMI CAYNNNNRTG 2 cut(s) 36, 531
SmlI CTYRAG 1 cut(s) 1121
SmoI CTYRAG 1 cut(s) 1121
SseBI AGGCCT 1 cut(s) 1119
SsiI CCGC 1 cut(s) 441
SspMI CTAG 4 cut(s) 18, 57, 410, 1031
StuI AGGCCT 1 cut(s) 1119
StyD4I CCNGG 5 cut(s) 309, 649, 867, 1071, 1137
StyI CCWWGG 1 cut(s) 658
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 121, 973
TatI WGTACW 2 cut(s) 270, 991
TfiI GAWTC 3 cut(s) 806, 925, 1076
TseI GCWGC 1 cut(s) 878
TspDTI ATGAA 7 cut(s) 57, 662, 758, 839, 966, 1068, 1110
TspGWI ACGGA 1 cut(s) 1034
Vha464I CTTAAG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 1034
VspI ATTAAT 2 cut(s) 204, 258
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
XceI RCATGY 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 4 cut(s) 18, 57, 410, 1031
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.