FvH4_7g04581

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000551
Physical Location & Seq
Forward (+)
5118419 .. 5119130
712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04581.t1

Sequence Viewer

Length: 471 bp
ATGTTTTCATCATGTGTTAATCCAAATTTCCATTTCCTATTTTTCTTGGAGGTTCCTGTTCCAAGCGAGGAGGTACTATTTCGAAACCCTGAAGACTTCAAGAACCTTCAATCTCTTGAGATATGTGGTGGGGAATTGACTGATGCTAGTGTGAAGAATCTGAAAGATCTTGTCTGTCTGACATGGCTAAATTTGTCGCAGAACCGCAGCTTGACAGATAAATCGTTGGAAGTGATTTTTGGTTTAACTGCATTGGTGTCTTCAAACATTTCAAACTCACGCATCACCGATGAGGGATTGCATTATTTAAAGCCTTATCACTATAAAGAGGAGGATGCAAGCTCAAGCCTCCATCCTTCACACCAAAGAGAAAACAGAGAAGAACAAAACCTAGCAATATTCAAGTTGTTGATATGGCATTGGCAGAGACAATCGGAGACGAAATCTGCCGTGACCGACCGATCTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

157

Amino Acids

17.99

Weight (kDa)

5.48

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AcsI RAATTY 2 cut(s) 25, 190
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 5 cut(s) 100, 110, 264, 273, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 210, 342
AluI AGCT 2 cut(s) 210, 342
Alw26I GTCTC 2 cut(s) 421, 431
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 2 cut(s) 25, 190
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 99, 252
BbvI GCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 421, 431
BfaI CTAG 2 cut(s) 147, 392
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 3 cut(s) 133, 291, 325
BpiI GAAGAC 2 cut(s) 99, 252
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 2 cut(s) 137, 328
BsaAI YACGTR 1 cut(s) 468
BseGI GGATG 2 cut(s) 340, 352
BseRI GAGGAG 2 cut(s) 83, 344
BseXI GCAGC 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 421, 431
BsmBI CGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 166, 461
BspACI CCGC 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 82
BssMI GATC 2 cut(s) 166, 461
BstBAI YACGTR 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 340
BstF5I GGATG 2 cut(s) 340, 352
BstKTI GATC 2 cut(s) 169, 464
BstMAI GTCTC 2 cut(s) 421, 431
BstMBI GATC 2 cut(s) 166, 461
BstMCI CGRYCG 1 cut(s) 460
BstSNI TACGTA 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 99, 252
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsCI GGATG 2 cut(s) 340, 352
Cac8I GCNNGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 12, 183
CviJI RGCY 5 cut(s) 187, 210, 313, 342, 348
CviKI_1 RGCY 5 cut(s) 187, 210, 313, 342, 348
CviQI GTAC 1 cut(s) 74
DpnI GATC 2 cut(s) 168, 463
DpnII GATC 2 cut(s) 166, 461
DraI TTTAAA 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 15, 186
FaiI YATR 5 cut(s) 13, 124, 184, 324, 415
FatI CATG 2 cut(s) 11, 182
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 2 cut(s) 339, 347
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 2 cut(s) 147, 392
GluI GCNGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 15, 186
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 162, 180, 436
Hpy188III TCNNGA 2 cut(s) 100, 116
HpyAV CCTTC 2 cut(s) 116, 366
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 3 cut(s) 251, 301, 338
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 2 cut(s) 15, 186
Kzo9I GATC 2 cut(s) 166, 461
LpnPI CCDG 2 cut(s) 69, 102
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 3 cut(s) 133, 291, 325
MaeI CTAG 2 cut(s) 147, 392
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 168, 463
MboI GATC 2 cut(s) 166, 461
MboII GAAGA 4 cut(s) 104, 166, 252, 392
MflI RGATCY 1 cut(s) 166
MluCI AATT 3 cut(s) 25, 134, 190
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 43, 61, 64, 286, 322, 325, 359
MseI TTAA 3 cut(s) 18, 245, 308
NdeII GATC 2 cut(s) 166, 461
NlaIII CATG 2 cut(s) 15, 186
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 451
NspV TTCGAA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 18, 245, 308
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 166, 461
SetI ASST 7 cut(s) 54, 75, 108, 212, 344, 393, 470
SfaNI GCATC 3 cut(s) 133, 291, 325
SfuI TTCGAA 1 cut(s) 82
SmlI CTYRAG 2 cut(s) 116, 343
SmoI CTYRAG 2 cut(s) 116, 343
SnaBI TACGTA 1 cut(s) 468
Sse9I AATT 3 cut(s) 25, 134, 190
SsiI CCGC 1 cut(s) 205
SspI AATATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 147, 392
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 82
TaqII GACCGA 1 cut(s) 470
TasI AATT 3 cut(s) 25, 134, 190
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 3 cut(s) 18, 245, 308
Tru9I TTAA 3 cut(s) 18, 245, 308
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 451
XapI RAATTY 2 cut(s) 25, 190
XspI CTAG 2 cut(s) 147, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.