Protein ROOT PRIMORDIUM DEFECTIVE
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0046621 |
| rosa_laevigata | RLG00000034424 |
| rosa_multiflora | Rmu_sc0003878.1_g000001 |
| rosa_samantha | Rh5BG318900 Rh5DG329500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 310 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AfeI | AGCGCT | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 22 |
| AgsI | TTSAA | 1 cut(s) | 201 |
| Alw21I | GWGCWC | 1 cut(s) | 30 |
| Aor51HI | AGCGCT | 1 cut(s) | 322 |
| AoxI | GGCC | 1 cut(s) | 310 |
| AseI | ATTAAT | 1 cut(s) | 245 |
| AspLEI | GCGC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 30 |
| BccI | CCATC | 3 cut(s) | 70, 202, 298 |
| BciVI | GTATCC | 1 cut(s) | 23 |
| BfaI | CTAG | 1 cut(s) | 17 |
| BfoI | RGCGCY | 1 cut(s) | 324 |
| BfuI | GTATCC | 1 cut(s) | 23 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 1 cut(s) | 7 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 22 |
| Bse1I | ACTGG | 1 cut(s) | 292 |
| BseDI | CCNNGG | 1 cut(s) | 7 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseNI | ACTGG | 1 cut(s) | 292 |
| BshFI | GGCC | 1 cut(s) | 312 |
| BsiHKAI | GWGCWC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BsnI | GGCC | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| BspANI | GGCC | 1 cut(s) | 312 |
| BspCNI | CTCAG | 1 cut(s) | 224 |
| BspLI | GGNNCC | 1 cut(s) | 60 |
| BsrI | ACTGG | 1 cut(s) | 292 |
| BssECI | CCNNGG | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 2 cut(s) | 11, 49 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 49 |
| BstDEI | CTNAG | 1 cut(s) | 232 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstH2I | RGCGCY | 1 cut(s) | 324 |
| BstHHI | GCGC | 1 cut(s) | 323 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 49, 58, 67, 318 |
| BsuI | GTATCC | 1 cut(s) | 23 |
| BsuRI | GGCC | 1 cut(s) | 312 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| CfoI | GCGC | 1 cut(s) | 323 |
| CviJI | RGCY | 3 cut(s) | 61, 256, 312 |
| CviKI_1 | RGCY | 3 cut(s) | 61, 256, 312 |
| DdeI | CTNAG | 1 cut(s) | 232 |
| EaeI | YGGCCR | 1 cut(s) | 310 |
| Eco47III | AGCGCT | 1 cut(s) | 322 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| FaiI | YATR | 1 cut(s) | 124 |
| FspBI | CTAG | 1 cut(s) | 17 |
| GlaI | GCGC | 1 cut(s) | 322 |
| HaeII | RGCGCY | 1 cut(s) | 324 |
| HaeIII | GGCC | 1 cut(s) | 312 |
| HhaI | GCGC | 1 cut(s) | 323 |
| Hin6I | GCGC | 1 cut(s) | 321 |
| HinP1I | GCGC | 1 cut(s) | 321 |
| Hpy188I | TCNGA | 1 cut(s) | 108 |
| Hpy188III | TCNNGA | 1 cut(s) | 250 |
| HpyAV | CCTTC | 2 cut(s) | 14, 49 |
| HpyCH4III | ACNGT | 2 cut(s) | 11, 49 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 49, 58, 67, 318 |
| HpyF3I | CTNAG | 1 cut(s) | 232 |
| HspAI | GCGC | 1 cut(s) | 321 |
| LmnI | GCTCC | 2 cut(s) | 33, 58 |
| LpnPI | CCDG | 4 cut(s) | 206, 305, 309, 314 |
| MaeI | CTAG | 1 cut(s) | 17 |
| MboII | GAAGA | 4 cut(s) | 145, 187, 193, 217 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MluCI | AATT | 1 cut(s) | 242 |
| MnlI | CCTC | 5 cut(s) | 33, 60, 84, 90, 272 |
| MseI | TTAA | 3 cut(s) | 220, 245, 262 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 49, 58, 67, 318 |
| NlaIV | GGNNCC | 1 cut(s) | 60 |
| PshBI | ATTAAT | 1 cut(s) | 245 |
| PspN4I | GGNNCC | 1 cut(s) | 60 |
| SaqAI | TTAA | 3 cut(s) | 220, 245, 262 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SgeI | CNNG | 9 cut(s) | 20, 29, 85, 205, 262, 298, 304, 309, 313 |
| Sse9I | AATT | 1 cut(s) | 242 |
| SspMI | CTAG | 1 cut(s) | 17 |
| TaaI | ACNGT | 2 cut(s) | 11, 49 |
| TasI | AATT | 1 cut(s) | 242 |
| Tru1I | TTAA | 3 cut(s) | 220, 245, 262 |
| Tru9I | TTAA | 3 cut(s) | 220, 245, 262 |
| TspDTI | ATGAA | 4 cut(s) | 146, 188, 194, 242 |
| VspI | ATTAAT | 1 cut(s) | 245 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 320 |
| XspI | CTAG | 1 cut(s) | 17 |