Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003886.1

Orthogroup ID

OG0031287

Physical Location & Seq

Genomic Coordinates Reverse (-)

9941 .. 14406

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003886.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggatgaaaagacatactataatgtcgagctacaggttgcaagagatttggatcgtgcgatccgggtcgcagttcgtcaggatgacgagcgattctggtcaggtagtagcatgaaagctggaaattctaagaagggttcgcagagcaagaagaatgtagcgaatgagttgttgatggtaaatgaccagggaggcacgtttgggttgccaaatttgatgaaagttgcggcagaggttttgggaaatggaggattgaggtcagcttacaaggatgtgatgggtactgggttttctatgttggtgaagaggatgagggagactaatatatttgggagagatggaattgatactaaaatgataagctcggctgctgaccttgccggcgtcggcgacgagaatgatgaagatgggcccgactgctcttacctagctgctggttctgcatcggaggttgttttgctgcccactctgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.03

Weight (kDa)

4.92

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031287)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003886.1_g000002 Rmu_sc0029199.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	55, 60
AcsI	RAATTY	2 cut(s)	124, 211
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	5 cut(s)	31, 119, 263, 363, 431
AluI	AGCT	5 cut(s)	31, 119, 263, 363, 431
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	55, 60
AoxI	GGCC	1 cut(s)	410
ApaI	GGGCCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	368, 431, 460
ApoI	RAATTY	2 cut(s)	124, 211
AspS9I	GGNCC	2 cut(s)	410, 411
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	355, 418, 447
BccI	CCATC	4 cut(s)	169, 271, 332, 401
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	4 cut(s)	228, 369, 432, 461
BlsI	GCNGC	4 cut(s)	229, 370, 433, 462
Bme1390I	CCNGG	2 cut(s)	65, 188
BmgT120I	GGNCC	2 cut(s)	410, 411
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	65, 188
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	4 cut(s)	10, 88, 277, 315
BseJI	GATNNNNATC	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	355, 418, 447
BshFI	GGCC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	64, 381
BsmAI	GTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	412
Bsp120I	GGGCCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	52, 60
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	55, 60
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	52, 60
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	10, 88, 277, 315
BstKTI	GATC	2 cut(s)	55, 63
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	2 cut(s)	52, 60
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 440, 469
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	63, 186
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	355, 418, 447
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	10, 88, 277, 315
Cac8I	GCNNGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	410, 411
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	7 cut(s)	31, 119, 263, 363, 368, 412, 431
CviKI_1	RGCY	7 cut(s)	31, 119, 263, 363, 368, 412, 431
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	54, 62
DpnII	GATC	2 cut(s)	52, 60
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	1 cut(s)	115
FaiI	YATR	5 cut(s)	16, 21, 113, 296, 326
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	228, 369, 432, 461
FokI	GGATG	4 cut(s)	17, 95, 284, 322
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	228, 369, 432, 461
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	4 cut(s)	228, 369, 432, 461
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	64, 381
HgaI	GACGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	2 cut(s)	64, 381
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	1 cut(s)	80
Hpy99I	CGWCG	2 cut(s)	389, 395
HpyAV	CCTTC	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	41, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 440, 469
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	52, 60
Lsp1109I	GCAGC	3 cut(s)	355, 418, 447
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	197
MalI	GATC	2 cut(s)	54, 62
MboI	GATC	2 cut(s)	52, 60
MboII	GAAGA	3 cut(s)	163, 316, 416
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	124, 211, 342
MnlI	CCTC	7 cut(s)	185, 226, 242, 249, 300, 306, 442
MroNI	GCCGGC	1 cut(s)	380
MspI	CCGG	2 cut(s)	64, 381
MspR9I	CCNGG	2 cut(s)	65, 188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	377, 440, 469
NaeI	GCCGGC	1 cut(s)	382
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	52, 60
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	229, 370, 433, 462
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	412
PspOMI	GGGCCC	1 cut(s)	410
PspPI	GGNCC	2 cut(s)	410, 411
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SatI	GCNGC	4 cut(s)	228, 369, 432, 461
Sau3AI	GATC	2 cut(s)	52, 60
Sau96I	GGNCC	2 cut(s)	410, 411
ScrFI	CCNGG	2 cut(s)	65, 188
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	452
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	124, 211, 342
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	63, 186
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	124, 211, 342
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	93
TseI	GCWGC	3 cut(s)	368, 431, 460
TspDTI	ATGAA	4 cut(s)	21, 128, 233, 417
XapI	RAATTY	2 cut(s)	124, 211
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.