Rmu_sc0029199.1_g000001

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029199.1
OG0031287
Physical Location & Seq
Forward (+)
1 .. 2560
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029199.1_g000001.1.cds

Sequence Viewer

Length: 688 bp
gtcaggtagtagcaagaaagctggaaattctaagaagggttcgcagagcaagaagaatgtagcgaatgagttgttgatggtaaatgaccagggaggcacgtttgggttgccaaatttgatgaaagttgcggcagaggttttgggaaatggaggattgaggtcagcttacaaggatgtgatgggtactgggttttctatgttggtgaagaggatgagggagatgaatatatttgggagagatggaattgatactaaaatgataagttcggctgctgaccttgccggcgtcggcgacgagaaagatgaagatgggcccgactactctaacctagctgctggttctgcatcggagtctaagacagctgagccttatctgagattgtgtgggcttgatcgagaggatgttcgtcgtcgatttttgtttgttgaaggccctgggctgtatcaccaaggctccactgctgcgctgaaagtattgtcatacttgcctttcccttactctgctttaagcacgctcatggtagtcccaactcctttgagagaaattgtctatgattatattgccaaacaacgctatggctggtttggcaagtctgaagattgcttggttgtgaaggagagagagtttcatggacccaaaataccaattcctccaacacttaaccgaaactcaaaaatgaacacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

228

Amino Acids

24.88

Weight (kDa)

9.08

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031287)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003886.1_g000002 Rmu_sc0029199.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcsI RAATTY 2 cut(s) 26, 113
AcuI CTGAAG 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 429
AjnI CCWGG 2 cut(s) 88, 434
AluBI AGCT 4 cut(s) 21, 165, 333, 363
AluI AGCT 4 cut(s) 21, 165, 333, 363
AoxI GGCC 2 cut(s) 312, 431
ApaI GGGCCC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 270, 333, 462
ApoI RAATTY 2 cut(s) 26, 113
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 4 cut(s) 312, 313, 432, 633
AsuHPI GGTGA 2 cut(s) 215, 438
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 257, 320, 449
BccI CCATC 4 cut(s) 71, 173, 234, 303
BciT130I CCWGG 2 cut(s) 90, 436
BfaI CTAG 1 cut(s) 330
BisI GCNGC 4 cut(s) 130, 271, 334, 463
BlpI GCTNAGC 1 cut(s) 364
BlsI GCNGC 4 cut(s) 131, 272, 335, 464
Bme1390I CCNGG 2 cut(s) 90, 436
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 4 cut(s) 312, 313, 432, 633
BmiI GGNNCC 3 cut(s) 314, 455, 635
BmrFI CCNGG 2 cut(s) 90, 436
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 286
BsaJI CCNNGG 4 cut(s) 89, 434, 435, 449
BsaXI ACNNNNNCTCC 4 cut(s) 438, 468, 609, 639
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 2 cut(s) 90, 436
BseDI CCNNGG 4 cut(s) 89, 434, 435, 449
BseGI GGATG 3 cut(s) 179, 217, 407
BseMII CTCAG 2 cut(s) 355, 366
BseNI ACTGG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 3 cut(s) 257, 320, 449
BshFI GGCC 2 cut(s) 314, 433
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 2 cut(s) 314, 433
Bsp120I GGGCCC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 392
Bsp1720I GCTNAGC 1 cut(s) 364
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 314, 433
BspCNI CTCAG 2 cut(s) 356, 367
BspLI GGNNCC 3 cut(s) 314, 455, 635
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 4 cut(s) 89, 434, 435, 449
BssMI GATC 1 cut(s) 392
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 2 cut(s) 90, 436
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 284, 513
BstDEI CTNAG 4 cut(s) 31, 355, 364, 375
BstF5I GGATG 3 cut(s) 179, 217, 407
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 1 cut(s) 395
BstMBI GATC 1 cut(s) 392
BstMWI GCNNNNNNNGC 3 cut(s) 279, 342, 586
BstNI CCWGG 2 cut(s) 90, 436
BstSCI CCNGG 2 cut(s) 88, 434
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 257, 320, 449
BsuRI GGCC 2 cut(s) 314, 433
BtsCI GGATG 3 cut(s) 179, 217, 407
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 284, 513
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 4 cut(s) 312, 313, 432, 633
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 518, 630
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 31, 355, 364, 375
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 88, 434
EcoT14I CCWWGG 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 2 cut(s) 521, 633
FaiI YATR 9 cut(s) 198, 228, 482, 519, 553, 559, 577, 631, 686
FaqI GGGAC 1 cut(s) 510
FatI CATG 2 cut(s) 517, 629
Fnu4HI GCNGC 4 cut(s) 130, 271, 334, 463
FokI GGATG 3 cut(s) 186, 224, 414
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 4 cut(s) 130, 271, 334, 463
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 466
GluI GCNGC 4 cut(s) 130, 271, 334, 463
HaeIII GGCC 2 cut(s) 314, 433
HapII CCGG 1 cut(s) 283
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 521, 633
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 283
HphI GGTGA 2 cut(s) 215, 438
Hpy188I TCNGA 3 cut(s) 350, 376, 596
Hpy188III TCNNGA 1 cut(s) 396
Hpy99I CGWCG 4 cut(s) 291, 297, 412, 415
HpyAV CCTTC 3 cut(s) 29, 423, 608
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 342, 586
HpyF3I CTNAG 4 cut(s) 31, 355, 364, 375
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 521, 633
HspAI GCGC 1 cut(s) 465
KroI GCCGGC 1 cut(s) 282
KroNI GCCGGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 9 cut(s) 7, 75, 102, 172, 296, 322, 421, 448, 566
Lsp1109I GCAGC 3 cut(s) 257, 320, 449
LweI GCATC 1 cut(s) 354
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 4 cut(s) 65, 218, 318, 609
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 5 cut(s) 26, 113, 244, 544, 646
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 8 cut(s) 87, 128, 144, 151, 202, 208, 392, 661
MroNI GCCGGC 1 cut(s) 282
MseI TTAA 2 cut(s) 507, 661
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 90, 436
MvaI CCWGG 2 cut(s) 90, 436
MwoI GCNNNNNNNGC 3 cut(s) 279, 342, 586
NaeI GCCGGC 1 cut(s) 284
NdeII GATC 1 cut(s) 392
NgoMIV GCCGGC 1 cut(s) 282
NlaIII CATG 2 cut(s) 521, 633
NlaIV GGNNCC 3 cut(s) 314, 455, 635
PasI CCCWGGG 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 284
PkrI GCNGC 4 cut(s) 131, 272, 335, 464
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 88, 434
PspGI CCWGG 2 cut(s) 88, 434
PspN4I GGNNCC 3 cut(s) 314, 455, 635
PspOMI GGGCCC 1 cut(s) 312
PspPI GGNCC 4 cut(s) 312, 313, 432, 633
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 507, 661
SatI GCNGC 4 cut(s) 130, 271, 334, 463
Sau3AI GATC 1 cut(s) 392
Sau96I GGNCC 4 cut(s) 312, 313, 432, 633
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 90, 436
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 1 cut(s) 354
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 516
Sse9I AATT 5 cut(s) 26, 113, 244, 544, 646
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 88, 434
StyI CCWWGG 1 cut(s) 449
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 395, 413
TasI AATT 5 cut(s) 26, 113, 244, 544, 646
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 507, 661
Tru9I TTAA 2 cut(s) 507, 661
TscAI CASTG 1 cut(s) 464
TseI GCWGC 3 cut(s) 270, 333, 462
TspDTI ATGAA 4 cut(s) 135, 237, 319, 618
TspRI CASTG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 2 cut(s) 26, 113
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.