Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003953.1

Orthogroup ID

OG0018128

Physical Location & Seq

Genomic Coordinates Forward (+)

77351 .. 78765

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003953.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggatgatagtgatgaggaccagagacttccccatcaccgcgagcccaaggaatttgtatccctggaccaacttgctgagcttggggttctcagctggcgtttagatgctgataactatgaaaccgatgaggagttgaagaagattcgtgaagaccgtggttactcctacatggcaatgcggcttttcagtggtgatccaatttggactccattcaatcgccctcatgacgatcttccagcaaggaaggagtacctcaaagcttttgtggataaagaagatggtgaacatgcagttgcagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

101

Amino Acids

11.88

Weight (kDa)

4.65

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018128)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G207700_v2.0.a1 Prupe.1G236200_v2.0.a1
rosa_multiflora	Rmu_sc0003953.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AciI	CCGC	2 cut(s)	40, 181
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	139, 217
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	82, 96, 263
AluI	AGCT	3 cut(s)	82, 96, 263
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	19, 67
AsuHPI	GGTGA	3 cut(s)	29, 206, 296
AvaII	GGWCC	2 cut(s)	19, 67
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	159
BccI	CCATC	2 cut(s)	42, 275
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	182, 300
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	2 cut(s)	183, 301
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	19, 67
BmgT120I	GGNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	48, 63, 157
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	3 cut(s)	48, 63, 157
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	69, 106
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	196, 232
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	40, 181
BspCNI	CTCAG	2 cut(s)	70, 105
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	226
BspPI	GGATC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	183
BssECI	CCNNGG	3 cut(s)	48, 63, 157
BssMI	GATC	2 cut(s)	196, 232
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	44, 98
BstDEI	CTNAG	2 cut(s)	78, 92
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	199, 235
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	196, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	70
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	44, 98
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	19, 67
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	3 cut(s)	172, 227, 290
CviJI	RGCY	6 cut(s)	46, 82, 96, 184, 263, 302
CviKI_1	RGCY	6 cut(s)	46, 82, 96, 184, 263, 302
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	78, 92
DpnI	GATC	2 cut(s)	198, 234
DpnII	GATC	2 cut(s)	196, 232
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	19, 67
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	175, 230, 293
FaiI	YATR	4 cut(s)	120, 173, 228, 291
FatI	CATG	3 cut(s)	171, 226, 289
Fnu4HI	GCNGC	2 cut(s)	182, 300
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	182, 300
GluI	GCNGC	2 cut(s)	182, 300
Hin1II	CATG	3 cut(s)	175, 230, 293
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	2 cut(s)	145, 208
HphI	GGTGA	3 cut(s)	29, 206, 296
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188III	TCNNGA	2 cut(s)	149, 227
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	293, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	78, 92
Hsp92II	CATG	3 cut(s)	175, 230, 293
Kzo9I	GATC	2 cut(s)	196, 232
LpnPI	CCDG	5 cut(s)	35, 50, 77, 82, 252
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	198, 234
MboI	GATC	2 cut(s)	196, 232
MboII	GAAGA	5 cut(s)	151, 154, 164, 227, 290
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	53, 201
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	10, 124, 234, 266
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	196, 232
NlaIII	CATG	3 cut(s)	175, 230, 293
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	183, 301
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	19, 67
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	176
SatI	GCNGC	2 cut(s)	182, 300
Sau3AI	GATC	2 cut(s)	196, 232
Sau96I	GGNCC	2 cut(s)	19, 67
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	84, 98, 258, 265
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	19, 67
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	53, 201
SsiI	CCGC	2 cut(s)	40, 181
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	2 cut(s)	53, 201
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	19, 67
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.