Rmu_sc0004084.1_g000057

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004084.1
Physical Location & Seq
Forward (+)
288110 .. 288393
284 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004084.1_g000057.1.cds

Sequence Viewer

Length: 237 bp
atggcaaccaagagtgctggaattgaacttgcaaaagagaatgcactggagagatcagattccagcaatgaattgagtgctttcacatatctaagattgaataagagattgttcgaaggggacaactggcggaacatggttgaatttgtgaaaggcatggctgaaggtggccggaatgaaagactgacagagtgcaactccactggcatcgaccttgttgttcattttatcaaatag

Protein Analysis

78

Amino Acids

8.81

Weight (kDa)

5.79

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031293)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004084.1_g000057
rosa_samantha Rh7CG242000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 183
AgsI TTSAA 3 cut(s) 26, 100, 143
AoxI GGCC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 114
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 114
Bse1I ACTGG 3 cut(s) 51, 131, 208
Bse3DI GCAATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 73
BseNI ACTGG 3 cut(s) 51, 131, 208
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 3 cut(s) 51, 131, 208
BssMI GATC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 44, 201
CviAII CATG 2 cut(s) 136, 157
CviJI RGCY 2 cut(s) 161, 171
CviKI_1 RGCY 2 cut(s) 161, 171
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 169
EciI GGCGGA 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 183
FaeI CATG 2 cut(s) 139, 160
FaiI YATR 3 cut(s) 88, 137, 158
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 135, 156
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 139, 160
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 110, 158
HpyCH4V TGCA 3 cut(s) 32, 44, 195
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 139, 160
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 3, 32, 76, 112, 185, 189
LweI GCATC 1 cut(s) 216
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MluCI AATT 3 cut(s) 21, 71, 143
MspI CCGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 46
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 139, 160
NspV TTCGAA 1 cut(s) 114
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 53
SetI ASST 2 cut(s) 169, 216
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 114
Sse9I AATT 3 cut(s) 21, 71, 143
SsiI CCGC 1 cut(s) 130
TaqI TCGA 2 cut(s) 114, 210
TasI AATT 3 cut(s) 21, 71, 143
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 51, 208
TspDTI ATGAA 3 cut(s) 84, 192, 212
TspRI CASTG 2 cut(s) 51, 208
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.