Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0031293

Physical Location & Seq

Genomic Coordinates Forward (+)

22604141 .. 22604424

Gene Structure 284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCAACCAAGAGTGCTGGAATTGAACTTGCAAAAGAGAATGCACTGGAGAGATCAGATTCCAGCAATGCATTGAGTGCTTTCACATATCTAAGATTGAATAAGAGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGGCCGGAATGAAAGACTGACAGAGTGCAACTCCACTGGCATCGACCTTGTTGTTCATTTTATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

6.57

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	7 - 49	4.5e-08	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031293)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004084.1_g000057
rosa_samantha	Rh7CG242000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	26, 100, 143
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	114
BmsI	GCATC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	51, 131, 208
Bse3DI	GCAATG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	3 cut(s)	51, 131, 208
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	51, 131, 208
BssMI	GATC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	44, 201
CviAII	CATG	2 cut(s)	136, 157
CviJI	RGCY	2 cut(s)	161, 171
CviKI_1	RGCY	2 cut(s)	161, 171
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	2 cut(s)	139, 160
FaiI	YATR	3 cut(s)	88, 137, 158
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	135, 156
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	2 cut(s)	139, 160
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	110, 158
HpyCH4V	TGCA	4 cut(s)	32, 44, 71, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	139, 160
Kzo9I	GATC	1 cut(s)	53
LpnPI	CCDG	6 cut(s)	3, 32, 76, 112, 185, 189
LweI	GCATC	1 cut(s)	216
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MluCI	AATT	2 cut(s)	21, 143
Mph1103I	ATGCAT	1 cut(s)	73
MspI	CCGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	139, 160
NsiI	ATGCAT	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	53
SetI	ASST	2 cut(s)	169, 216
SfaNI	GCATC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	114
Sse9I	AATT	2 cut(s)	21, 143
SsiI	CCGC	1 cut(s)	130
TaqI	TCGA	2 cut(s)	114, 210
TasI	AATT	2 cut(s)	21, 143
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	2 cut(s)	51, 208
TspDTI	ATGAA	2 cut(s)	192, 212
TspRI	CASTG	2 cut(s)	51, 208
XapI	RAATTY	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.