Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0031294

Physical Location & Seq

Genomic Coordinates Forward (+)

175677 .. 176024

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgctggaggagtacgttccagccaggccgaacgactatgcggagtacaagagggagagaaagaagaaggcgatggaggcagaggtgacgagagagctcgatcagagaagacaggaggaggagaggacagagagggaggagagagaaagagaaagagatagggagtttggagattcaaggttgaacattttaggcgaagaagtgtggaggaggagggcagcgatgagtggcttaacggctgttttggtagctcaaagatcaccgtctcgggtgagcaacttagatggttttactattgggaagtcggagagtggaggattggatgtaaaagctggatcgtttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

115

Amino Acids

13.42

Weight (kDa)

5.74

Isoelectric Point (pI)

79.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031294)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004165.1_g000051
rosa_samantha	Rh4CG208600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	343
AfaI	GTAC	2 cut(s)	14, 47
AgsI	TTSAA	3 cut(s)	177, 184, 344
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	97, 251, 332
AluI	AGCT	3 cut(s)	97, 251, 332
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	97, 252, 283
AvaI	CYCGRG	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	67, 278
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	328
BseRI	GAGGAG	6 cut(s)	23, 131, 134, 152, 223, 226
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	100, 257, 335
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	343
BssMI	GATC	3 cut(s)	100, 257, 335
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	103, 260, 338
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	100, 257, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	28
BtgZI	GCGATG	2 cut(s)	86, 236
BtsCI	GGATG	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	13, 46
CviJI	RGCY	7 cut(s)	23, 28, 97, 231, 239, 251, 332
CviKI_1	RGCY	7 cut(s)	23, 28, 97, 231, 239, 251, 332
CviQI	GTAC	2 cut(s)	13, 46
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	3 cut(s)	102, 259, 337
DpnII	GATC	3 cut(s)	100, 257, 335
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	270
FaiI	YATR	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	3 cut(s)	97, 252, 283
Hpy188I	TCNGA	2 cut(s)	105, 307
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	100, 257, 335
LpnPI	CCDG	5 cut(s)	10, 33, 37, 98, 318
Lsp1109I	GCAGC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	102, 259, 337
MboI	GATC	3 cut(s)	100, 257, 335
MboII	GAAGA	3 cut(s)	76, 120, 209
MhlI	GDGCHC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	3 cut(s)	100, 257, 335
NmuCI	GTSAC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	14, 47
RsaNI	GTAC	2 cut(s)	13, 46
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	100, 257, 335
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	18, 87, 99, 182, 253, 334
SsiI	CCGC	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	99
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.