Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0031294

Physical Location & Seq

Genomic Coordinates Reverse (-)

43699587 .. 43699946

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACGCAGTGTAGTAGACGCTGGTTGGCATCATGTCGAAGGTGCCGGCTACGTGGAGTACAAGAAGGAGAGAAAGAAGAAGCGATAGAGGCCGAGGTGAAGAGAGAGCTCGATTGGAGAAGACAGGAGGAGGAGAGGACAAAGAGGGAGGAGAGAAAAAGAGAAAGAGAGAGGGATTTTGGAGATTCAAGTTTGAACATTTCAGGCAAGGAAGTGTGGAGGAAGAGGGCGGCGATGAGTGGCTCAGCGGCGGTTTTGGTAGCTCAAAGATTGTCGTCCCGACTGAGCAACTCAAATGGTTTTACTATCGGGAAGTTAGAGAGTGGAGGATTTGATGTAGGAGCTGGATGGTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

119

Amino Acids

13.75

Weight (kDa)

9.71

Isoelectric Point (pI)

76.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031294)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004165.1_g000051
rosa_samantha	Rh4CG208600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	3 cut(s)	230, 248, 251
AfaI	GTAC	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	189, 196, 356
AluBI	AGCT	3 cut(s)	109, 263, 344
AluI	AGCT	3 cut(s)	109, 263, 344
Alw21I	GWGCWC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	231, 249
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	232, 250
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	258, 275
BseRI	GAGGAG	3 cut(s)	143, 146, 164
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	3 cut(s)	230, 248, 251
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	257, 276
BspLI	GGNNCC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	95, 218
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	244, 284
BstF5I	GGATG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	45
CseI	GACGC	2 cut(s)	13, 27
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	6 cut(s)	49, 92, 109, 243, 263, 344
CviKI_1	RGCY	6 cut(s)	49, 92, 109, 243, 263, 344
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	244, 284
Eam1104I	CTCTTC	2 cut(s)	95, 218
EarI	CTCTTC	2 cut(s)	95, 218
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	36
FaiI	YATR	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	231, 249
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	231, 249
GluI	GCNGC	2 cut(s)	231, 249
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	2 cut(s)	13, 27
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	279, 310
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	33, 59
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	244, 284
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	7, 59, 110, 189, 330
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	1 cut(s)	52
MboII	GAAGA	4 cut(s)	89, 112, 132, 235
MhlI	GDGCHC	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	47
NgoMIV	GCCGGC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	232, 250
Ppu21I	YACGTR	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	231, 249
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	44, 55, 99, 111, 265, 346
SfaNI	GCATC	1 cut(s)	38
SsiI	CCGC	3 cut(s)	230, 248, 251
SstI	GAGCTC	1 cut(s)	111
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	37, 111
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	2 cut(s)	233, 251
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	14
TspRI	CASTG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.