Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004208.1

Orthogroup ID

OG0030901

Physical Location & Seq

Genomic Coordinates Forward (+)

49222 .. 49563

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004208.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggcgccccaaactctccacaagccttcttcgatttgcgtgccactacagacgatcctcaaatcccagaacaagtccaaaccgtcaagctcagtgattttaaaaatgacggcatctctgatgatgcacaacgaggcgatgcagccggcactggtcaaaatcacattgacggtgctggaggagtacgatccggccaggcggaacgaccacgcggagtataggagggagaggaagaagaaggcgatggaggccaaggtgaagagagagctcgattggagaagaggacagagggggaggagagagaaagagaaaaagagggggatttcgttgattcaaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

113

Amino Acids

13.09

Weight (kDa)

10.44

Isoelectric Point (pI)

72.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030901)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028555
rosa_multiflora	Rmu_sc0004208.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	199, 212
AclWI	GGATC	2 cut(s)	49, 182
AcoI	YGGCCR	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	90, 268
AluI	AGCT	2 cut(s)	90, 268
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	49, 182
AoxI	GGCC	2 cut(s)	192, 249
ApeKI	GCWGC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	114, 122, 129
BpmI	CTGGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	194, 310
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	194, 251
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	146, 191
BsnI	GGCC	2 cut(s)	194, 251
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	54, 187
BspACI	CCGC	2 cut(s)	199, 212
BspANI	GGCC	2 cut(s)	194, 251
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	49, 182
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	54, 187
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	84, 172
Bst6I	CTCTTC	2 cut(s)	254, 274
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	41, 147
BstDEI	CTNAG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	57, 190
BstMBI	GATC	2 cut(s)	54, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	194, 251
BtgZI	GCGATG	2 cut(s)	152, 257
BtsIMutI	CAGTG	2 cut(s)	99, 149
Cac8I	GCNNGC	2 cut(s)	41, 147
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	6 cut(s)	25, 90, 145, 194, 251, 268
CviKI_1	RGCY	6 cut(s)	25, 90, 145, 194, 251, 268
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	91
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	56, 189
DpnII	GATC	2 cut(s)	54, 187
DraI	TTTAAA	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	254, 274
EarI	CTCTTC	2 cut(s)	254, 274
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	194, 251
HapII	CCGG	2 cut(s)	146, 191
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	146, 191
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	36, 232
HpyCH4III	ACNGT	2 cut(s)	84, 172
HpyCH4V	TGCA	2 cut(s)	127, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	54, 187
LpnPI	CCDG	7 cut(s)	80, 137, 159, 161, 181, 204, 208
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	3 cut(s)	114, 122, 129
MalI	GATC	2 cut(s)	56, 189
MboI	GATC	2 cut(s)	54, 187
MboII	GAAGA	5 cut(s)	21, 244, 247, 271, 291
MhlI	GDGCHC	1 cut(s)	270
Mly113I	GGCGCC	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	145
MseI	TTAA	1 cut(s)	101
MspI	CCGG	2 cut(s)	146, 191
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	248
NaeI	GCCGGC	1 cut(s)	147
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	54, 187
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	144
PluTI	GGCGCC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	54, 187
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	4 cut(s)	92, 258, 270, 340
SfaNI	GCATC	3 cut(s)	114, 122, 129
SfcI	CTRYAG	1 cut(s)	47
SfoI	GGCGCC	1 cut(s)	6
SsiI	CCGC	2 cut(s)	199, 212
SspDI	GGCGCC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	84, 172
TaqI	TCGA	2 cut(s)	32, 270
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	99, 156
TseI	GCWGC	1 cut(s)	142
TspRI	CASTG	2 cut(s)	99, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.