Rmu_sc0004268.1_g000013

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004268.1
OG0024120
Physical Location & Seq
Reverse (-)
38277 .. 38735
459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atgcctaaagcagcgaggagtatgactgaaatattccataaagaaaatttgccgattgcaaaagttcattcaatccttggtggtgctcaaattggttttaaaaaaagagattgttataaccacttaagaaatgttcgtcacagacaattggatggaggagatgctcagtcagtcctcacttacttcaggaaaaagcaagctgagaatccccaattcttttatgcaatccaatgcgacgaagatggaagagcaactaatttcttttgggtcgactctcgatcacggacagcttatgaatattttggagatgtggtcacattcgacacaacttataggacaaacaagtatgatatgccgtttgcgccattcacaggagtaaaccaccactggcaatcaatacaattcggctgtgcacttctacaagatgagacggaggctaccttttttttggttatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

152

Amino Acids

17.69

Weight (kDa)

7.76

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 68 - 148 3e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 104 - 149 1.8e-12 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024120)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12203
rosa_multiflora Rmu_sc0004268.1_g000013
rosa_rugosa Rorug03G0294500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AccI GTMKAC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 371
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 72
AluBI AGCT 2 cut(s) 200, 290
AluI AGCT 2 cut(s) 200, 290
Alw21I GWGCWC 2 cut(s) 88, 415
Alw26I GTCTC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 411
ApaLI GTGCAC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 88, 415
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 146, 236
BceAI ACGGC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 422
BfrI CTTAAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 179, 192
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 31, 171
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 88, 415
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 88, 415
Bsp143I GATC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 178, 193
BspQI GCTCTTC 1 cut(s) 241
BspTI CTTAAG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 165, 201
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 364
CviJI RGCY 4 cut(s) 200, 290, 408, 437
CviKI_1 RGCY 4 cut(s) 200, 290, 408, 437
DdeI CTNAG 2 cut(s) 165, 201
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
DraI TTTAAA 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 422
FaiI YATR 8 cut(s) 23, 39, 117, 222, 294, 333, 348, 353
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 364
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 205, 272
Hpy166II GTNNAC 3 cut(s) 271, 379, 413
Hpy188III TCNNGA 2 cut(s) 187, 276
Hpy8I GTNNAC 3 cut(s) 271, 379, 413
Hpy99I CGWCG 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 59, 224, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 165, 201
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 1 cut(s) 278
LguI GCTCTTC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 172, 357, 373
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 137, 313
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 251, 258
MfeI CAATTG 1 cut(s) 146
MhlI GDGCHC 2 cut(s) 88, 415
MluCI AATT 6 cut(s) 46, 90, 146, 212, 256, 401
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 4 cut(s) 9, 149, 185, 427
MseI TTAA 2 cut(s) 99, 125
MspCI CTTAAG 1 cut(s) 124
MunI CAATTG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 1 cut(s) 278
NmuCI GTSAC 2 cut(s) 137, 313
PciSI GCTCTTC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PsiI TTATAA 1 cut(s) 117
SalI GTCGAC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 99, 125
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 278
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 2 cut(s) 88, 415
SetI ASST 3 cut(s) 202, 292, 443
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 6 cut(s) 46, 90, 146, 212, 256, 401
SspI AATATT 2 cut(s) 33, 299
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 3 cut(s) 270, 277, 321
TasI AATT 6 cut(s) 46, 90, 146, 212, 256, 401
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 99, 125
Tru9I TTAA 2 cut(s) 99, 125
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 2 cut(s) 137, 313
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 137, 313
TspDTI ATGAA 2 cut(s) 56, 309
TspGWI ACGGA 2 cut(s) 298, 446
TspRI CASTG 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 411
XapI RAATTY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.