Rorug03G0294500

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
30282574 .. 30288211
5638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0294500.1

Sequence Viewer

Length: 1623 bp
ATGGGACTTGCTCTTCCTCTTCTGCTTGGCCACCCCTCGATCCCCACCACAACCCTCATAACATTCCCCACCATCCTATTCCTCCTCACCAGCTCGACTACCATCCCCACCACCACGATCCCAACCACGCCAATGGCTTCGCCAATCCGGTCCCGTTTTCTGTACGCAAAAGGGCCTGGCAACACTCTAATCAAGGACTTCCTAGAGGTCTGCCTTTCCAATTTCTCTCTTTTAATTTTACTTTACTCCTGTTTGAACTTGAACTATGAATTGGTTGAGGCTGACAATAACTTTGAAAACCCCAATCATGCTAAGCTTTATGTTGCACAAATTTCAAGAACAGCCACGGAGGACGTTATTCGCTCCTTGTTTGGACAATTTGGAGACATAGTCGAGGTTGTAATGTTGAAGGATAAGCGGACTGGCTTCCAACAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAAGCAAACCCTGTCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGTAATGCTTTTCAATTGTTTTCTAATCTTTACCAATTATCTCATTGTACTTAGAAGATATATACATTTGATTCCTTTTTCAATATTACTTCAGGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAATGCACCTGGTGGTCCGTACTCTCATGAACCAGTTAGGGTAGTATCTGATCATAGTGATTCCATTGGAGGGCAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCACGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCTGGGGCAGCAACAGAGTTCTCAGACATTTTCTAGCAATTCTACTTCAGCTGCTCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTTATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGAACTGAATCAAGTACAATTGCAGTCTGAAACAAGTCCTGTTGTTGGCCCAACATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

60.42

Weight (kDa)

5.97

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 106 - 170 1.9e-14 RNA recognition motif
RRM_1 PF00076 196 - 256 1.5e-12 RNA recognition motif
WW PF00397 451 - 480 1.2e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 1385
AciI CCGC 3 cut(s) 418, 696, 896
AclI AACGTT 1 cut(s) 1124
AclWI GGATC 4 cut(s) 34, 112, 893, 906
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 6 cut(s) 330, 542, 707, 1024, 1056, 1263
AcuI CTGAAG 2 cut(s) 845, 1296
AdeI CACNNNGTG 1 cut(s) 959
AfaI GTAC 5 cut(s) 164, 576, 819, 968, 1575
AfiI CCNNNNNNNGG 2 cut(s) 1017, 1604
AflIII ACRYGT 1 cut(s) 1613
AjnI CCWGG 5 cut(s) 175, 514, 606, 955, 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AleI CACNNNNGTG 1 cut(s) 687
AluBI AGCT 6 cut(s) 93, 316, 491, 614, 746, 1316
AluI AGCT 6 cut(s) 93, 316, 491, 614, 746, 1316
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 4 cut(s) 34, 112, 893, 906
AlwNI CAGNNNCTG 2 cut(s) 1243, 1564
AoxI GGCC 3 cut(s) 28, 173, 1606
ApeKI GCWGC 3 cut(s) 470, 1273, 1316
ApoI RAATTY 6 cut(s) 330, 542, 707, 1024, 1056, 1263
ArsI GACNNNNNNTTYG 4 cut(s) 275, 307, 1531, 1563
AspS9I GGNCC 4 cut(s) 150, 173, 962, 1607
AsuHPI GGTGA 2 cut(s) 79, 636
AvaII GGWCC 2 cut(s) 150, 962
AxyI CCTNAGG 1 cut(s) 1440
BalI TGGCCA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 898
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 3 cut(s) 482, 1285, 1303
BccI CCATC 4 cut(s) 80, 110, 1379, 1422
BciT130I CCWGG 5 cut(s) 177, 516, 608, 957, 1091
BciVI GTATCC 1 cut(s) 1382
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 3 cut(s) 203, 1299, 1352
BfmI CTRYAG 1 cut(s) 1107
BfuAI ACCTGC 1 cut(s) 1385
BfuI GTATCC 1 cut(s) 1382
BisI GCNGC 3 cut(s) 471, 1274, 1317
BlpI GCTNAGC 2 cut(s) 312, 873
BlsI GCNGC 3 cut(s) 472, 1275, 1318
Bme1390I CCNGG 5 cut(s) 177, 516, 608, 957, 1091
Bme18I GGWCC 2 cut(s) 150, 962
BmgT120I GGNCC 4 cut(s) 150, 173, 962, 1607
BmiI GGNNCC 5 cut(s) 152, 757, 900, 1095, 1527
BmrFI CCNGG 5 cut(s) 177, 516, 608, 957, 1091
BmsI GCATC 8 cut(s) 457, 683, 1046, 1104, 1152, 1218, 1249, 1464
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 1 cut(s) 1384
Bpu1102I GCTNAGC 2 cut(s) 312, 873
BpuEI CTTGAG 1 cut(s) 1194
BsaJI CCNNGG 4 cut(s) 345, 515, 568, 911
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 1114, 1144
Bsc4I CCNNNNNNNGG 2 cut(s) 1017, 1604
Bse1I ACTGG 4 cut(s) 427, 714, 980, 1367
Bse21I CCTNAGG 1 cut(s) 1440
Bse3DI GCAATG 1 cut(s) 955
BseBI CCWGG 5 cut(s) 177, 516, 608, 957, 1091
BseDI CCNNGG 4 cut(s) 345, 515, 568, 911
BseGI GGATG 4 cut(s) 72, 102, 698, 1167
BseLI CCNNNNNNNGG 2 cut(s) 1017, 1604
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 4 cut(s) 887, 1214, 1301, 1431
BseNI ACTGG 4 cut(s) 427, 714, 980, 1367
BseRI GAGGAG 3 cut(s) 74, 1338, 1457
BseXI GCAGC 3 cut(s) 482, 1285, 1303
BsgI GTGCAG 1 cut(s) 1177
BshFI GGCC 3 cut(s) 30, 175, 1608
BsiHKAI GWGCWC 1 cut(s) 874
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 3 cut(s) 18, 136, 1445
BslI CCNNNNNNNGG 2 cut(s) 1017, 1604
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 3 cut(s) 18, 136, 1445
BsnI GGCC 3 cut(s) 30, 175, 1608
Bsp1286I GDGCHC 1 cut(s) 874
Bsp143I GATC 5 cut(s) 39, 117, 898, 922, 997
Bsp1720I GCTNAGC 2 cut(s) 312, 873
BspACI CCGC 3 cut(s) 418, 696, 896
BspANI GGCC 3 cut(s) 30, 175, 1608
BspCNI CTCAG 4 cut(s) 886, 1213, 1300, 1432
BspHI TCATGA 2 cut(s) 973, 1333
BspLI GGNNCC 5 cut(s) 152, 757, 900, 1095, 1527
BspMI ACCTGC 1 cut(s) 1385
BspPI GGATC 4 cut(s) 34, 112, 893, 906
BspQI GCTCTTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 955
BsrI ACTGG 4 cut(s) 427, 714, 980, 1367
BssECI CCNNGG 4 cut(s) 345, 515, 568, 911
BssMI GATC 5 cut(s) 39, 117, 898, 922, 997
BssT1I CCWWGG 2 cut(s) 568, 911
Bst2UI CCWGG 5 cut(s) 177, 516, 608, 957, 1091
Bst4CI ACNGT 2 cut(s) 1111, 1152
Bst6I CTCTTC 2 cut(s) 18, 24
BstAPI GCANNNNNTGC 1 cut(s) 1468
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 7 cut(s) 312, 821, 873, 903, 1200, 1287, 1440
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 4 cut(s) 72, 102, 698, 1167
BstKTI GATC 5 cut(s) 42, 120, 901, 925, 1000
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 5 cut(s) 39, 117, 898, 922, 997
BstMWI GCNNNNNNNGC 7 cut(s) 479, 488, 734, 743, 1237, 1468, 1483
BstNI CCWGG 5 cut(s) 177, 516, 608, 957, 1091
BstNSI RCATGY 1 cut(s) 1617
BstSCI CCNGG 5 cut(s) 175, 514, 606, 955, 1089
BstSFI CTRYAG 1 cut(s) 1107
BstV1I GCAGC 3 cut(s) 482, 1285, 1303
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 1440
BsuI GTATCC 1 cut(s) 1382
BsuRI GGCC 3 cut(s) 30, 175, 1608
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 4 cut(s) 72, 102, 698, 1167
BtsIMutI CAGTG 2 cut(s) 721, 1116
BveI ACCTGC 1 cut(s) 1385
Cac8I GCNNGC 1 cut(s) 735
CaiI CAGNNNCTG 2 cut(s) 1243, 1564
CciI TCATGA 2 cut(s) 973, 1333
Cfr13I GGNCC 4 cut(s) 150, 173, 962, 1607
CsiI ACCWGGT 1 cut(s) 955
Csp6I GTAC 5 cut(s) 163, 575, 818, 967, 1574
CviAII CATG 4 cut(s) 308, 974, 1334, 1614
CviQI GTAC 5 cut(s) 163, 575, 818, 967, 1574
DdeI CTNAG 7 cut(s) 312, 821, 873, 903, 1200, 1287, 1440
DpnI GATC 5 cut(s) 41, 119, 900, 924, 999
DpnII GATC 5 cut(s) 39, 117, 898, 922, 997
DraI TTTAAA 2 cut(s) 495, 750
DraIII CACNNNGTG 1 cut(s) 959
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 18, 24
EarI CTCTTC 2 cut(s) 18, 24
Eco130I CCWWGG 2 cut(s) 568, 911
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 150, 962
Eco57I CTGAAG 2 cut(s) 845, 1296
Eco81I CCTNAGG 1 cut(s) 1440
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 5 cut(s) 175, 514, 606, 955, 1089
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 568, 911
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 2 cut(s) 568, 911
FaeI CATG 4 cut(s) 311, 977, 1337, 1617
FalI AAGNNNNNCTT 2 cut(s) 1129, 1161
FaqI GGGAC 3 cut(s) 18, 136, 1445
FatI CATG 4 cut(s) 307, 973, 1333, 1613
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 1 cut(s) 997
Fnu4HI GCNGC 3 cut(s) 471, 1274, 1317
FokI GGATG 4 cut(s) 59, 89, 705, 1174
Fsp4HI GCNGC 3 cut(s) 471, 1274, 1317
FspBI CTAG 3 cut(s) 203, 1299, 1352
GluI GCNGC 3 cut(s) 471, 1274, 1317
GsuI CTGGAG 1 cut(s) 1384
HaeIII GGCC 3 cut(s) 30, 175, 1608
HapII CCGG 1 cut(s) 148
Hin1II CATG 4 cut(s) 311, 977, 1337, 1617
HindIII AAGCTT 3 cut(s) 314, 612, 744
HinfI GANTC 3 cut(s) 841, 1007, 1567
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 79, 636
Hpy166II GTNNAC 1 cut(s) 1370
Hpy188I TCNGA 5 cut(s) 488, 997, 1245, 1290, 1588
Hpy188III TCNNGA 5 cut(s) 336, 448, 974, 1334, 1352
Hpy8I GTNNAC 1 cut(s) 1370
HpyAV CCTTC 5 cut(s) 403, 921, 1335, 1506, 1539
HpyCH4III ACNGT 2 cut(s) 1111, 1152
HpyCH4IV ACGT 2 cut(s) 354, 1124
HpyF10VI GCNNNNNNNGC 7 cut(s) 479, 488, 734, 743, 1237, 1468, 1483
HpyF3I CTNAG 7 cut(s) 312, 821, 873, 903, 1200, 1287, 1440
HpySE526I ACGT 2 cut(s) 354, 1124
Hsp92II CATG 4 cut(s) 311, 977, 1337, 1617
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 5 cut(s) 39, 117, 898, 922, 997
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 368, 1351
Lsp1109I GCAGC 3 cut(s) 482, 1285, 1303
LweI GCATC 8 cut(s) 457, 683, 1046, 1104, 1152, 1218, 1249, 1464
MabI ACCWGGT 1 cut(s) 955
MaeI CTAG 3 cut(s) 203, 1299, 1352
MaeII ACGT 2 cut(s) 354, 1124
MaeIII GTNAC 2 cut(s) 1219, 1358
MalI GATC 5 cut(s) 41, 119, 900, 924, 999
MboI GATC 5 cut(s) 39, 117, 898, 922, 997
MboII GAAGA 6 cut(s) 5, 11, 674, 837, 1197, 1499
MfeI CAATTG 3 cut(s) 784, 1466, 1577
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 874
MlsI TGGCCA 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 30
MmeI TCCRAC 2 cut(s) 454, 1075
Mox20I TGGCCA 1 cut(s) 30
Mph1103I ATGCAT 1 cut(s) 1039
MscI TGGCCA 1 cut(s) 30
MseI TTAA 6 cut(s) 233, 494, 603, 705, 749, 1136
MslI CAYNNNNRTG 3 cut(s) 131, 687, 1226
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 1316
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 5 cut(s) 177, 516, 608, 957, 1091
MunI CAATTG 3 cut(s) 784, 1466, 1577
MvaI CCWGG 5 cut(s) 177, 516, 608, 957, 1091
MwoI GCNNNNNNNGC 7 cut(s) 479, 488, 734, 743, 1237, 1468, 1483
NdeII GATC 5 cut(s) 39, 117, 898, 922, 997
NlaIII CATG 4 cut(s) 311, 977, 1337, 1617
NlaIV GGNNCC 5 cut(s) 152, 757, 900, 1095, 1527
NmuCI GTSAC 2 cut(s) 1219, 1358
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1617
OliI CACNNNNGTG 1 cut(s) 687
PagI TCATGA 2 cut(s) 973, 1333
PciI ACATGT 1 cut(s) 1613
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 3 cut(s) 841, 1007, 1567
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 3 cut(s) 472, 1275, 1318
PscI ACATGT 1 cut(s) 1613
PsiI TTATAA 1 cut(s) 1404
Psp1406I AACGTT 1 cut(s) 1124
Psp6I CCWGG 5 cut(s) 175, 514, 606, 955, 1089
PspGI CCWGG 5 cut(s) 175, 514, 606, 955, 1089
PspN4I GGNNCC 5 cut(s) 152, 757, 900, 1095, 1527
PspPI GGNCC 4 cut(s) 150, 173, 962, 1607
PstNI CAGNNNCTG 2 cut(s) 1243, 1564
PsuI RGATCY 1 cut(s) 898
PsyI GACNNNGTC 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 1316
RsaI GTAC 5 cut(s) 164, 576, 819, 968, 1575
RsaNI GTAC 5 cut(s) 163, 575, 818, 967, 1574
RseI CAYNNNNRTG 3 cut(s) 131, 687, 1226
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 6 cut(s) 233, 494, 603, 705, 749, 1136
SatI GCNGC 3 cut(s) 471, 1274, 1317
Sau3AI GATC 5 cut(s) 39, 117, 898, 922, 997
Sau96I GGNCC 4 cut(s) 150, 173, 962, 1607
ScrFI CCNGG 5 cut(s) 177, 516, 608, 957, 1091
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 955
SfaNI GCATC 8 cut(s) 457, 683, 1046, 1104, 1152, 1218, 1249, 1464
SfcI CTRYAG 1 cut(s) 1107
SinI GGWCC 2 cut(s) 150, 962
SmiMI CAYNNNNRTG 3 cut(s) 131, 687, 1226
SmlI CTYRAG 1 cut(s) 1209
SmoI CTYRAG 1 cut(s) 1209
SsiI CCGC 3 cut(s) 418, 696, 896
SspI AATATT 2 cut(s) 639, 855
SspMI CTAG 3 cut(s) 203, 1299, 1352
StyD4I CCNGG 5 cut(s) 175, 514, 606, 955, 1089
StyI CCWWGG 2 cut(s) 568, 911
TaaI ACNGT 2 cut(s) 1111, 1152
TaiI ACGT 2 cut(s) 357, 1127
TaqI TCGA 4 cut(s) 38, 95, 393, 925
TatI WGTACW 2 cut(s) 817, 1573
TfiI GAWTC 3 cut(s) 841, 1007, 1567
Tru1I TTAA 6 cut(s) 233, 494, 603, 705, 749, 1136
Tru9I TTAA 6 cut(s) 233, 494, 603, 705, 749, 1136
TscAI CASTG 2 cut(s) 721, 1116
TseFI GTSAC 2 cut(s) 1219, 1358
TseI GCWGC 3 cut(s) 470, 1273, 1316
Tsp45I GTSAC 2 cut(s) 1219, 1358
TspDTI ATGAA 2 cut(s) 282, 990
TspGWI ACGGA 4 cut(s) 362, 954, 1238, 1504
TspRI CASTG 2 cut(s) 721, 1116
Tth111I GACNNNGTC 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 150, 962
XapI RAATTY 6 cut(s) 330, 542, 707, 1024, 1056, 1263
XbaI TCTAGA 1 cut(s) 1351
XceI RCATGY 1 cut(s) 1617
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XspI CTAG 3 cut(s) 203, 1299, 1352
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.