FvH4_2g18171

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004837
Physical Location & Seq
Forward (+)
15549463 .. 15553768
4306 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18171.t1

Sequence Viewer

Length: 2076 bp
ATGACAGACTTCAATGAAGATTCATCCCCTTCTCAATGCATGCCTCCGGTAGCAAACACATCTGAAGTAGAGAATGGTGAAATGAATACTCCAATAAGGAGAGTCAAACATTTAGAAGCCCCATATTTAGGTATGCTTTTTGAATCAATTGAAGAAGCCAGAAAGTATTATGAAGAATATGGTCGGCAAGAAGGCTTTTGGATTCGCACTCAATGTTCAGTCAAGACAAGATCACATTTTGATGAGGTGACTAGTTGTCGATTCGTTTGTGCACATCAGAGAAAATATATACAGAAGAAAAAACTAAATGAGGGGTGGAAAAAAGACCATCAGAAAGAGATATGTGATAATGAGAATGAGAATGAGAATAAAAATGGGGATGTCAATGTAGAGAAAAGTGGGGATGTTAATACAAAGAAAGTAGCAGACAAAAATTGTTCTACTGGAAAATGTGGGTGCAAAGCTACCATGCGAGTAATTCATGAGAAGTGGTCGAACAAATGGAGAGTATCTGTTTTTAGGGACTTTCATAATCACAAAGTTGTTACTCCAGCAAGAAGAATGAAGATGAAGTCAAATAAACATATGCCTAAAGCAGCTAGGAGTATGACTGAAATATTCCATAAAGAAAACTTGCCGATTGCAAAAGTTCACTCAATCCTTGGTGGTGCTGAGATTGGTTTTAACAAGAGAGATTGTTATAACCATTTAAAAAGTGTTCGTCATAGACAATTGGATGGAGGAGATGCTCAGTCAAAATCGAAATTCAAGAAGGAGATGAAGAGATGTATTCAGTTCACATACAAGACTGAAGATTTTGAAGAGAAGTGGAAAGCTCTGATGAAAGAAAATGGATTAGAAGAAAATGATTGGCTAAAAAGTCTTTATGAGATACGAGCTTCTTGGGTGCCGGTTTATAATCGTGGAACATTTTTTGCTGGAATGAATACTATTGGACAGCACAAGTTTCGTATTGTGAATGATGATGAGTTCCTCTTGAAAGATGCGGCAAAGTTGTATACGAGAAATGTTTTCAACAAATTCAAGGGGGAATGGACTCGAATTAATCACTACAAGGTTGAAGAAAGAGATCGTGATAACGAATGGCCCTCGTATCTGGTGAAAAAAAGACTTGGAGAACATGAGCAAGATTTTATAGTGAGGTTAGATTTGACAACCTACAATGGTTCTTGTGAGTGCCAAAACTTTGAGTTTGTTGGAATACTTTGTAGGCACTTGTTAAAAGTATTTTCACGTCTTGATATTGAAACAATACCTGCACATTTCATTCTTCCAAGATGGAGACAAGAGGCAAACAAGTTTAGGATAATGGATTTAGAAGACTTGGCCAGAAGTGTTGGTAATGAAGAGTCAGAAGCATTAAGACTTGACCACATGTGTCACCAAGCAACTAAATTGGCTTGTATTGCTGCACATTCTAAGGAGGGATACACATTGTTCATGGAGGCTTTAAACGACATATCAAAAAAATTGTCAAAAATTCCTGACCAACCTGTTATTAGCAAGGAAATGAGTGCTCCTATAAACCAAGAGGATCATCCTGTCATGGAAACTTGTGTTTCTCCAAATAGAGATGATCCATGTACGAATACTCTCTCCTCCCAGTCGTTGCTTTTGGACCCAAATATCTCCAAGACAAAAGTCAGGACACAACAAGAAAACTTGCTCTCTGAATTCAGAAAGAAAGATTCAATGACCTACGTACAACTTTTATACCCCAGCCTTAATAACCGCTTCCAACCCACTCCGAATTCAATTCCTTCATCGACGCCACTCCGAATTCAATTCCTCCGAATTCAACCCACTCCGCTTCGCTTCTTCAATCCATCGACGCCGCTGCCTCACTCCTCACTCCATCAAGACCTCAGCCTTCGCTTCTTCAATCCATCGCCGCTTCTTCAATCCATCGCCGCTTCTTCAATCCATCACCGCTGCTTCAGTACATCGCCGCCGCTGCTTCAGTACATCGCCGCCGCTGCTTCAGTACTTCAACGCCGCTGCTTCAGTACATCGCCGCCGCTGTTTCACTCCATCGCCACCACTACATCGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

692

Amino Acids

80.22

Weight (kDa)

9.06

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 395 - 420 4.5e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 702, 918
Acc36I ACCTGC 1 cut(s) 1285
AccB1I GGYRCC 1 cut(s) 907
AccI GTMKAC 1 cut(s) 1019
AccII CGCG 1 cut(s) 2071
AclWI GGATC 2 cut(s) 1563, 1592
AcoI YGGCCR 1 cut(s) 1347
AcsI RAATTY 7 cut(s) 764, 1040, 1500, 1694, 1771, 1800, 1815
AcuI CTGAAG 6 cut(s) 84, 831, 1942, 1964, 1986, 2008
AcyI GRCGYC 2 cut(s) 1790, 1853
AfaI GTAC 6 cut(s) 1606, 1725, 1963, 1985, 2007, 2029
AfiI CCNNNNNNNGG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 1395
AhdI GACNNNNNGTC 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 251
AjiI CACGTC 1 cut(s) 1256
AluBI AGCT 4 cut(s) 464, 599, 836, 899
AluI AGCT 4 cut(s) 464, 599, 836, 899
Alw21I GWGCWC 2 cut(s) 274, 1540
Alw26I GTCTC 1 cut(s) 1297
Alw44I GTGCAC 1 cut(s) 270
AlwI GGATC 2 cut(s) 1563, 1592
AoxI GGCC 2 cut(s) 1106, 1347
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 7 cut(s) 596, 1430, 1858, 1953, 1975, 1997, 2019
ApoI RAATTY 7 cut(s) 764, 1040, 1500, 1694, 1771, 1800, 1815
ArsI GACNNNNNNTTYG 2 cut(s) 1478, 1510
AseI ATTAAT 1 cut(s) 1065
AspLEI GCGC 1 cut(s) 2073
AspS9I GGNCC 2 cut(s) 1107, 1639
AsuHPI GGTGA 5 cut(s) 89, 259, 1132, 1394, 1940
AvaII GGWCC 1 cut(s) 1639
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 1349
BanI GGYRCC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 1347
Bbv12I GWGCWC 2 cut(s) 274, 1540
BbvCI CCTCAGC 1 cut(s) 1886
BbvI GCAGC 7 cut(s) 608, 1417, 1845, 1940, 1962, 1984, 2006
BccI CCATC 9 cut(s) 336, 731, 1293, 1855, 1884, 1915, 1934, 1953, 2060
BcgI CGANNNNNNTGC 4 cut(s) 950, 984, 1840, 1874
BciVI GTATCC 1 cut(s) 1442
BcoDI GTCTC 1 cut(s) 1297
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 2 cut(s) 252, 600
BfuAI ACCTGC 1 cut(s) 1285
BfuI GTATCC 1 cut(s) 1442
BmcAI AGTACT 1 cut(s) 2007
Bme18I GGWCC 1 cut(s) 1639
BmeRI GACNNNNNGTC 1 cut(s) 255
BmgBI CACGTC 1 cut(s) 1256
BmgT120I GGNCC 2 cut(s) 1107, 1639
BmiI GGNNCC 2 cut(s) 909, 1641
BmrI ACTGGG 1 cut(s) 1618
BmsI GCATC 2 cut(s) 736, 994
BmuI ACTGGG 1 cut(s) 1618
BoxI GACNNNNGTC 1 cut(s) 1661
BpiI GAAGAC 1 cut(s) 1347
BpmI CTGGAG 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 1886
BsaAI YACGTR 1 cut(s) 1723
BsaHI GRCGYC 2 cut(s) 1790, 1853
BsaJI CCNNGG 1 cut(s) 661
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 910
Bse1I ACTGG 2 cut(s) 448, 1624
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 5 cut(s) 23, 385, 409, 742, 1558
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 663, 764, 1900
BseNI ACTGG 2 cut(s) 448, 1624
BseRI GAGGAG 3 cut(s) 756, 1609, 1858
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 7 cut(s) 608, 1417, 1845, 1940, 1962, 1984, 2006
BseYI CCCAGC 1 cut(s) 1739
BsgI GTGCAG 2 cut(s) 1263, 1416
Bsh1236I CGCG 1 cut(s) 2071
BshFI GGCC 2 cut(s) 1108, 1349
BshNI GGYRCC 1 cut(s) 907
BsiHKAI GWGCWC 2 cut(s) 274, 1540
BsiSI CCGG 2 cut(s) 47, 911
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 1297
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 2 cut(s) 1108, 1349
Bsp1286I GDGCHC 2 cut(s) 274, 1540
Bsp143I GATC 4 cut(s) 230, 1090, 1555, 1597
BspANI GGCC 2 cut(s) 1108, 1349
BspCNI CTCAG 3 cut(s) 664, 763, 1899
BspFNI CGCG 1 cut(s) 2071
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 909, 1641
BspMI ACCTGC 1 cut(s) 1285
BspPI GGATC 2 cut(s) 1563, 1592
BspT107I GGYRCC 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 910
BsrI ACTGG 2 cut(s) 448, 1624
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 4 cut(s) 230, 1090, 1555, 1597
BssNAI GTATAC 1 cut(s) 1020
BssNI GRCGYC 2 cut(s) 1790, 1853
BssT1I CCWWGG 1 cut(s) 661
Bst1107I GTATAC 1 cut(s) 1020
Bst6I CTCTTC 3 cut(s) 776, 816, 1362
BstACI GRCGYC 2 cut(s) 1790, 1853
BstBAI YACGTR 1 cut(s) 1723
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 4 cut(s) 672, 750, 1440, 1886
BstF5I GGATG 5 cut(s) 23, 385, 409, 742, 1558
BstFNI CGCG 1 cut(s) 2071
BstHHI GCGC 1 cut(s) 2073
BstKTI GATC 4 cut(s) 233, 1093, 1558, 1600
BstMAI GTCTC 1 cut(s) 1297
BstMBI GATC 4 cut(s) 230, 1090, 1555, 1597
BstMWI GCNNNNNNNGC 3 cut(s) 1427, 1975, 1997
BstNSI RCATGY 2 cut(s) 43, 1399
BstPAI GACNNNNGTC 1 cut(s) 1661
BstSLI GKGCMC 1 cut(s) 274
BstSNI TACGTA 1 cut(s) 1723
BstUI CGCG 1 cut(s) 2071
BstV1I GCAGC 7 cut(s) 608, 1417, 1845, 1940, 1962, 1984, 2006
BstV2I GAAGAC 1 cut(s) 1347
BstZ17I GTATAC 1 cut(s) 1020
BsuI GTATCC 1 cut(s) 1442
BsuRI GGCC 2 cut(s) 1108, 1349
BtgZI GCGATG 7 cut(s) 1893, 1912, 1950, 1972, 2016, 2038, 2052
BtrI CACGTC 1 cut(s) 1256
BtsCI GGATG 5 cut(s) 23, 385, 409, 742, 1558
BveI ACCTGC 1 cut(s) 1285
Cac8I GCNNGC 1 cut(s) 41
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 2073
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 2 cut(s) 1107, 1639
CseI GACGC 2 cut(s) 1798, 1861
Csp6I GTAC 6 cut(s) 1605, 1724, 1962, 1984, 2006, 2028
CviAII CATG 8 cut(s) 40, 469, 482, 1142, 1396, 1462, 1567, 1602
CviQI GTAC 6 cut(s) 1605, 1724, 1962, 1984, 2006, 2028
DdeI CTNAG 4 cut(s) 672, 750, 1440, 1886
DpnI GATC 4 cut(s) 232, 1092, 1557, 1599
DpnII GATC 4 cut(s) 230, 1090, 1555, 1597
DraI TTTAAA 2 cut(s) 711, 1473
DriI GACNNNNNGTC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 1347
Eam1104I CTCTTC 3 cut(s) 776, 816, 1362
Eam1105I GACNNNNNGTC 1 cut(s) 255
EarI CTCTTC 3 cut(s) 776, 816, 1362
Eco105I TACGTA 1 cut(s) 1723
Eco130I CCWWGG 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 1639
Eco57I CTGAAG 6 cut(s) 84, 831, 1942, 1964, 1986, 2008
EcoRI GAATTC 4 cut(s) 1694, 1771, 1800, 1815
EcoT14I CCWWGG 1 cut(s) 661
EcoT22I ATGCAT 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 8 cut(s) 43, 472, 485, 1145, 1399, 1465, 1570, 1605
FaqI GGGAC 1 cut(s) 536
FatI CATG 8 cut(s) 39, 468, 481, 1141, 1395, 1461, 1566, 1601
FauNDI CATATG 1 cut(s) 585
FblI GTMKAC 1 cut(s) 1019
FokI GGATG 5 cut(s) 10, 392, 416, 749, 1545
FspBI CTAG 2 cut(s) 252, 600
GlaI GCGC 1 cut(s) 2072
GsaI CCCAGC 1 cut(s) 1743
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 1108, 1349
HapII CCGG 2 cut(s) 47, 911
HgaI GACGC 2 cut(s) 1798, 1861
HhaI GCGC 1 cut(s) 2073
Hin1I GRCGYC 2 cut(s) 1790, 1853
Hin1II CATG 8 cut(s) 43, 472, 485, 1145, 1399, 1465, 1570, 1605
Hin6I GCGC 1 cut(s) 2071
HinP1I GCGC 1 cut(s) 2071
HinfI GANTC 8 cut(s) 20, 102, 143, 202, 261, 1057, 1370, 1709
HpaII CCGG 2 cut(s) 47, 911
HphI GGTGA 5 cut(s) 89, 259, 1132, 1394, 1940
Hpy166II GTNNAC 4 cut(s) 272, 652, 798, 1020
Hpy188III TCNNGA 9 cut(s) 223, 482, 769, 997, 1094, 1259, 1505, 1666, 1880
Hpy8I GTNNAC 4 cut(s) 272, 652, 798, 1020
Hpy99I CGWCG 2 cut(s) 1792, 1855
HpyAV CCTTC 5 cut(s) 39, 185, 766, 1791, 1901
HpyCH4IV ACGT 2 cut(s) 1255, 1722
HpyCH4V TGCA 6 cut(s) 39, 272, 459, 644, 1280, 1433
HpyF10VI GCNNNNNNNGC 3 cut(s) 1427, 1975, 1997
HpyF3I CTNAG 4 cut(s) 672, 750, 1440, 1886
HpySE526I ACGT 2 cut(s) 1255, 1722
Hsp92I GRCGYC 2 cut(s) 1790, 1853
Hsp92II CATG 8 cut(s) 43, 472, 485, 1145, 1399, 1465, 1570, 1605
HspAI GCGC 1 cut(s) 2071
Kzo9I GATC 4 cut(s) 230, 1090, 1555, 1597
LmnI GCTCC 1 cut(s) 1543
Lsp1109I GCAGC 7 cut(s) 608, 1417, 1845, 1940, 1962, 1984, 2006
LweI GCATC 2 cut(s) 736, 994
MaeI CTAG 2 cut(s) 252, 600
MaeII ACGT 2 cut(s) 1255, 1722
MaeIII GTNAC 3 cut(s) 247, 544, 1400
MalI GATC 4 cut(s) 232, 1092, 1557, 1599
MboI GATC 4 cut(s) 230, 1090, 1555, 1597
MfeI CAATTG 2 cut(s) 147, 731
MhlI GDGCHC 2 cut(s) 274, 1540
MlsI TGGCCA 1 cut(s) 1349
MluNI TGGCCA 1 cut(s) 1349
MlyI GAGTC 3 cut(s) 111, 1051, 1379
MmeI TCCRAC 2 cut(s) 1198, 1783
Mox20I TGGCCA 1 cut(s) 1349
Mph1103I ATGCAT 1 cut(s) 41
MscI TGGCCA 1 cut(s) 1349
MseI TTAA 8 cut(s) 408, 684, 710, 1065, 1241, 1382, 1472, 1746
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 1349
MspA1I CMGCKG 6 cut(s) 1858, 1953, 1975, 1997, 2019, 2041
MspI CCGG 2 cut(s) 47, 911
MunI CAATTG 2 cut(s) 147, 731
MvnI CGCG 1 cut(s) 2071
MwoI GCNNNNNNNGC 3 cut(s) 1427, 1975, 1997
NdeI CATATG 1 cut(s) 585
NdeII GATC 4 cut(s) 230, 1090, 1555, 1597
NlaIII CATG 8 cut(s) 43, 472, 485, 1145, 1399, 1465, 1570, 1605
NlaIV GGNNCC 2 cut(s) 909, 1641
NmuCI GTSAC 2 cut(s) 247, 1400
NsiI ATGCAT 1 cut(s) 41
NspI RCATGY 2 cut(s) 43, 1399
PaeI GCATGC 1 cut(s) 43
PagI TCATGA 1 cut(s) 481
PciI ACATGT 1 cut(s) 1395
PfeI GAWTC 5 cut(s) 20, 143, 202, 261, 1709
PleI GAGTC 3 cut(s) 110, 1051, 1378
PpsI GAGTC 3 cut(s) 110, 1051, 1378
Ppu21I YACGTR 1 cut(s) 1723
PscI ACATGT 1 cut(s) 1395
PshAI GACNNNNGTC 1 cut(s) 1661
PshBI ATTAAT 1 cut(s) 1065
PsiI TTATAA 2 cut(s) 702, 918
PspFI CCCAGC 1 cut(s) 1739
PspN4I GGNNCC 2 cut(s) 909, 1641
PspPI GGNCC 2 cut(s) 1107, 1639
RsaI GTAC 6 cut(s) 1606, 1725, 1963, 1985, 2007, 2029
RsaNI GTAC 6 cut(s) 1605, 1724, 1962, 1984, 2006, 2028
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 8 cut(s) 408, 684, 710, 1065, 1241, 1382, 1472, 1746
Sau3AI GATC 4 cut(s) 230, 1090, 1555, 1597
Sau96I GGNCC 2 cut(s) 1107, 1639
ScaI AGTACT 1 cut(s) 2007
SchI GAGTC 3 cut(s) 111, 1051, 1379
SduI GDGCHC 2 cut(s) 274, 1540
SfaNI GCATC 2 cut(s) 736, 994
SinI GGWCC 1 cut(s) 1639
SmiMI CAYNNNNRTG 1 cut(s) 240
SnaBI TACGTA 1 cut(s) 1723
SpeI ACTAGT 1 cut(s) 251
SphI GCATGC 1 cut(s) 43
SspI AATATT 1 cut(s) 618
SspMI CTAG 2 cut(s) 252, 600
StyI CCWWGG 1 cut(s) 661
TaiI ACGT 2 cut(s) 1258, 1725
TaqI TCGA 6 cut(s) 259, 494, 761, 1060, 1787, 1850
TatI WGTACW 4 cut(s) 1961, 1983, 2005, 2027
TfiI GAWTC 5 cut(s) 20, 143, 202, 261, 1709
Tru1I TTAA 8 cut(s) 408, 684, 710, 1065, 1241, 1382, 1472, 1746
Tru9I TTAA 8 cut(s) 408, 684, 710, 1065, 1241, 1382, 1472, 1746
TseFI GTSAC 2 cut(s) 247, 1400
TseI GCWGC 7 cut(s) 596, 1430, 1858, 1953, 1975, 1997, 2019
Tsp45I GTSAC 2 cut(s) 247, 1400
VneI GTGCAC 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 1639
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 7 cut(s) 764, 1040, 1500, 1694, 1771, 1800, 1815
XceI RCATGY 2 cut(s) 43, 1399
XmiI GTMKAC 1 cut(s) 1019
XspI CTAG 2 cut(s) 252, 600
ZrmI AGTACT 1 cut(s) 2007
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.