Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

33855696 .. 33860025

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGTTCAATCCAATTCTAAGATGGGTTCTTTCAGAAAGTTCATGGCTTTTACTACTTTCTTCACAGTTTTATCACTTTTTCTGATTCCTACAAAAGCCCAAGAAGTAGGATTCATATCCGCAGTTATATCAAGTAAAGGTCTTGACTTTACCAAGGACTTGCTGATACAAGAGGCAATTTCTTCTATAATTCCACTTCAATTGCCTCAAATTGAAAAGTCTGTGAAAATCCCACTTATCGGTCAAGTTGATGTTGCTCTGTCCAATATCACAATATATAGTGTTGATATTGCTTCTTCATATGTGGAGACTGGGGACTCCGGTATTGCTTTGGTTGCTTCAGGAGCCACTGCAAATTTGAGTATGCATTGGCAGTACTCTTATACTACTTGGTTGTTTGAAGTTTCGGATAATGGGGCCGCCTTTATTCAGGTTGAAGGTATGGAAGTTGGTGTTACCTTAGCTTTGAAGGACCAACAAGGAAGTCTTAAGCTGTCAGTTTTGGATTGTGGATGCTATGTGAAGGATATCTCCATCAAGTTAGACGGTGGAGCATCTTGGCTTTACCAAGGGATAGTGGATGCTTTTGGTGGACAAATAGTTTCTGCAGTTGAAGAAAATATTTCCAAGAAAGTCAAAGAAGGAATAACGAAGCTTGATTCGTCACTTCAATCGCTTCCAAAGCAAATCGAGCTGGATGACATTGCTGCTTTGAATGTCACTTTGGTGGACAATCCTGTGCTGAGTAATTCTTCCATTGAATTTCAGATCAATGGTCTATTCACAGCTCCTATTGATGATTCCACATCCAGCTTAGACCATAAAGGTTCACTAGATCCTCTTCCACGCAGTGCTCCAGCTAAGATGGTTGAGATATCATTGCATGAAGATGTCTTTAACTCGGTGTCCTTGGTCTATTTCAATGCAAACTATATGAACTGGATTATTAACAAAATACCAGATCAATCCCTTTTGAACACTGCTGGATGGAGATACATTATTCCTCGACTGTACAAGCAGTATCCAAACAAGGATATGGATCTTAATGTTACTGTATCTTCTCAACCAATCATTACAGTTGTGAACAATGGCATTGACATCACTGTTTACTCTGATGTGACAATTGATGTCATAGACAATGAAGTTATACCAGTTGCGTGCATATCAATGCACATTCACGCTTCATGTGCTCCAGAGATCCTGAGGAATACACTAGCTGGTATTGTTAAATTGAATGATTTTACTGCATCTTTGAAGTGGAGCAAAATTGGTGACCTACACATGCGCCTCGTTCAGGCAGTGTTGTCAACGGTCCTCAAAACTGTTATCATGCCTTATGTGAATTTATGGCTCTGGAAAGGACTACCTTTACCACTTCCGCATGGATTTAAGCTTCAGAATTCTGAAACCTTCTCCACCAATTCAAGGCTTACAATATACAGTGATGTTGAGTTTGTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

487

Amino Acids

53.47

Weight (kDa)

4.93

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	47 - 218	5e-25	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	284 - 484	7.7e-33	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 420, 1379
AclWI	GGATC	3 cut(s)	830, 1047, 1192
AcsI	RAATTY	4 cut(s)	355, 761, 1342, 1399
AcuI	CTGAAG	2 cut(s)	324, 1379
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	2 cut(s)	377, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	239, 1294, 1425
AflII	CTTAAG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	9 cut(s)	464, 493, 655, 694, 788, 813, 860, 1217, 1393
AluI	AGCT	9 cut(s)	464, 493, 655, 694, 788, 813, 860, 1217, 1393
Alw21I	GWGCWC	2 cut(s)	856, 1192
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	830, 1047, 1192
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	4 cut(s)	355, 761, 1342, 1399
AspLEI	GCGC	1 cut(s)	1287
AspS9I	GGNCC	3 cut(s)	417, 472, 1312
AsuHPI	GGTGA	1 cut(s)	1283
AvaII	GGWCC	2 cut(s)	472, 1312
AxyI	CCTNAGG	1 cut(s)	1202
Bbv12I	GWGCWC	2 cut(s)	856, 1192
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	4 cut(s)	16, 542, 859, 981
BciVI	GTATCC	1 cut(s)	1032
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	833, 1214
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	1032
BisI	GCNGC	2 cut(s)	420, 708
BlsI	GCNGC	2 cut(s)	421, 709
BmcAI	AGTACT	1 cut(s)	377
Bme18I	GGWCC	2 cut(s)	472, 1312
BmgT120I	GGNCC	3 cut(s)	417, 472, 1312
BmiI	GGNNCC	2 cut(s)	346, 418
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	503, 563, 571, 1256
BmuI	ACTGGG	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	840, 1176
Bpu10I	CCTNAGC	1 cut(s)	460
BsaBI	GATNNNNATC	2 cut(s)	115, 1038
BsaJI	CCNNGG	3 cut(s)	153, 568, 909
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 1294, 1425
Bse1I	ACTGG	3 cut(s)	316, 944, 1151
Bse21I	CCTNAGG	1 cut(s)	1202
Bse3DI	GCAATG	2 cut(s)	702, 878
Bse8I	GATNNNNATC	2 cut(s)	115, 1038
BseDI	CCNNGG	3 cut(s)	153, 568, 909
BseGI	GGATG	5 cut(s)	518, 586, 703, 806, 992
BseJI	GATNNNNATC	2 cut(s)	115, 1038
BseLI	CCNNNNNNNGG	3 cut(s)	239, 1294, 1425
BseMI	GCAATG	2 cut(s)	702, 878
BseMII	CTCAG	2 cut(s)	734, 1193
BseNI	ACTGG	3 cut(s)	316, 944, 1151
BseXI	GCAGC	1 cut(s)	694
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	856, 1192
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	239, 1294, 1425
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	856, 1192
Bsp1407I	TGTACA	1 cut(s)	1011
Bsp143I	GATC	5 cut(s)	768, 835, 961, 1039, 1197
BspACI	CCGC	3 cut(s)	120, 420, 1379
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	735, 1194
BspLI	GGNNCC	2 cut(s)	346, 418
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	3 cut(s)	830, 1047, 1192
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	2 cut(s)	702, 878
BsrGI	TGTACA	1 cut(s)	1011
BsrI	ACTGG	3 cut(s)	316, 944, 1151
BssECI	CCNNGG	3 cut(s)	153, 568, 909
BssMI	GATC	5 cut(s)	768, 835, 961, 1039, 1197
BssT1I	CCWWGG	3 cut(s)	153, 568, 909
Bst4CI	ACNGT	9 cut(s)	67, 548, 1011, 1054, 1078, 1105, 1312, 1324, 1442
Bst6I	CTCTTC	1 cut(s)	846
BstAFI	CTTAAG	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	1159
BstDEI	CTNAG	6 cut(s)	18, 460, 743, 814, 861, 1202
BstEII	GGTNACC	1 cut(s)	1271
BstENI	CCTNNNNNAGG	1 cut(s)	1292
BstF5I	GGATG	5 cut(s)	518, 586, 703, 806, 992
BstHHI	GCGC	1 cut(s)	1287
BstKTI	GATC	5 cut(s)	771, 838, 964, 1042, 1200
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	5 cut(s)	768, 835, 961, 1039, 1197
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 344, 682, 691, 1187
BstNSI	RCATGY	1 cut(s)	1285
BstPI	GGTNACC	1 cut(s)	1271
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	694
BstX2I	RGATCY	3 cut(s)	835, 1039, 1197
BstYI	RGATCY	3 cut(s)	835, 1039, 1197
Bsu36I	CCTNAGG	1 cut(s)	1202
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	5 cut(s)	518, 586, 703, 806, 992
BtsI	GCAGTG	4 cut(s)	348, 856, 978, 1305
BtsIMutI	CAGTG	6 cut(s)	348, 856, 978, 1101, 1305, 1447
Cac8I	GCNNGC	1 cut(s)	1159
CfoI	GCGC	1 cut(s)	1287
Cfr13I	GGNCC	3 cut(s)	417, 472, 1312
Csp6I	GTAC	2 cut(s)	376, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	6 cut(s)	43, 884, 1185, 1282, 1330, 1382
CviQI	GTAC	2 cut(s)	376, 1012
DdeI	CTNAG	6 cut(s)	18, 460, 743, 814, 861, 1202
DpnI	GATC	5 cut(s)	770, 837, 963, 1041, 1199
DpnII	GATC	5 cut(s)	768, 835, 961, 1039, 1197
DraIII	CACNNNGTG	1 cut(s)	851
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco130I	CCWWGG	3 cut(s)	153, 568, 909
Eco32I	GATATC	2 cut(s)	529, 876
Eco47I	GGWCC	2 cut(s)	472, 1312
Eco57I	CTGAAG	2 cut(s)	324, 1379
Eco81I	CCTNAGG	1 cut(s)	1202
Eco91I	GGTNACC	1 cut(s)	1271
EcoNI	CCTNNNNNAGG	1 cut(s)	1292
EcoO65I	GGTNACC	1 cut(s)	1271
EcoRI	GAATTC	1 cut(s)	1399
EcoRV	GATATC	2 cut(s)	529, 876
EcoT14I	CCWWGG	3 cut(s)	153, 568, 909
EcoT22I	ATGCAT	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	153, 568, 909
FaeI	CATG	6 cut(s)	46, 887, 1188, 1285, 1333, 1385
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	6 cut(s)	42, 883, 1184, 1281, 1329, 1381
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	420, 708
FokI	GGATG	5 cut(s)	525, 593, 710, 793, 999
Fsp4HI	GCNGC	2 cut(s)	420, 708
FspBI	CTAG	2 cut(s)	833, 1214
GlaI	GCGC	1 cut(s)	1286
GluI	GCNGC	2 cut(s)	420, 708
GsuI	CTGGAG	2 cut(s)	840, 1176
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	1287
Hin1II	CATG	6 cut(s)	46, 887, 1188, 1285, 1333, 1385
Hin6I	GCGC	1 cut(s)	1285
HinP1I	GCGC	1 cut(s)	1285
HincII	GTYRAC	1 cut(s)	1308
HindII	GTYRAC	1 cut(s)	1308
HindIII	AAGCTT	2 cut(s)	653, 1391
HinfI	GANTC	5 cut(s)	85, 111, 317, 659, 800
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	1283
Hpy166II	GTNNAC	6 cut(s)	593, 730, 830, 1084, 1108, 1308
Hpy188I	TCNGA	7 cut(s)	35, 84, 409, 768, 1114, 1398, 1405
Hpy188III	TCNNGA	5 cut(s)	143, 342, 1193, 1201, 1354
Hpy8I	GTNNAC	6 cut(s)	593, 730, 830, 1084, 1108, 1308
HpyAV	CCTTC	5 cut(s)	431, 463, 517, 635, 1420
HpyCH4III	ACNGT	9 cut(s)	67, 548, 1011, 1054, 1078, 1105, 1312, 1324, 1442
HpyCH4V	TGCA	8 cut(s)	353, 367, 608, 883, 926, 1161, 1171, 1247
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 344, 682, 691, 1187
HpyF3I	CTNAG	6 cut(s)	18, 460, 743, 814, 861, 1202
Hsp92II	CATG	6 cut(s)	46, 887, 1188, 1285, 1333, 1385
HspAI	GCGC	1 cut(s)	1285
Kzo9I	GATC	5 cut(s)	768, 835, 961, 1039, 1197
LmnI	GCTCC	6 cut(s)	344, 551, 793, 859, 1195, 1260
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	4 cut(s)	503, 563, 571, 1256
MaeI	CTAG	2 cut(s)	833, 1214
MaeIII	GTNAC	6 cut(s)	454, 663, 718, 1048, 1117, 1271
MalI	GATC	5 cut(s)	770, 837, 963, 1041, 1199
MboI	GATC	5 cut(s)	768, 835, 961, 1039, 1197
MboII	GAAGA	8 cut(s)	52, 174, 288, 626, 744, 833, 899, 1050
MfeI	CAATTG	2 cut(s)	200, 1122
MflI	RGATCY	3 cut(s)	835, 1039, 1197
MhlI	GDGCHC	2 cut(s)	856, 1192
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	7 cut(s)	166, 216, 849, 1014, 1197, 1298, 1325
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	6 cut(s)	489, 897, 948, 1044, 1227, 1389
MslI	CAYNNNNRTG	3 cut(s)	725, 888, 1166
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	321
MunI	CAATTG	2 cut(s)	200, 1122
MwoI	GCNNNNNNNGC	5 cut(s)	335, 344, 682, 691, 1187
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	768, 835, 961, 1039, 1197
NlaIII	CATG	6 cut(s)	46, 887, 1188, 1285, 1333, 1385
NlaIV	GGNNCC	2 cut(s)	346, 418
NmuCI	GTSAC	4 cut(s)	663, 718, 1117, 1271
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	1285
OliI	CACNNNNGTG	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	85, 111, 659, 800
PkrI	GCNGC	2 cut(s)	421, 709
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	1271
PspN4I	GGNNCC	2 cut(s)	346, 418
PspPI	GGNCC	3 cut(s)	417, 472, 1312
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	3 cut(s)	835, 1039, 1197
RsaI	GTAC	2 cut(s)	377, 1013
RsaNI	GTAC	2 cut(s)	376, 1012
RseI	CAYNNNNRTG	3 cut(s)	725, 888, 1166
SaqAI	TTAA	6 cut(s)	489, 897, 948, 1044, 1227, 1389
SatI	GCNGC	2 cut(s)	420, 708
Sau3AI	GATC	5 cut(s)	768, 835, 961, 1039, 1197
Sau96I	GGNCC	3 cut(s)	417, 472, 1312
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	856, 1192
SfaNI	GCATC	4 cut(s)	503, 563, 571, 1256
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	2 cut(s)	472, 1312
SmiMI	CAYNNNNRTG	3 cut(s)	725, 888, 1166
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SsiI	CCGC	3 cut(s)	120, 420, 1379
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	833, 1214
StyI	CCWWGG	3 cut(s)	153, 568, 909
TaaI	ACNGT	9 cut(s)	67, 548, 1011, 1054, 1078, 1105, 1312, 1324, 1442
TaqI	TCGA	2 cut(s)	690, 1006
TaqII	GACCGA	1 cut(s)	230
TatI	WGTACW	2 cut(s)	375, 1011
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	4 cut(s)	85, 111, 659, 800
Tru1I	TTAA	6 cut(s)	489, 897, 948, 1044, 1227, 1389
Tru9I	TTAA	6 cut(s)	489, 897, 948, 1044, 1227, 1389
TscAI	CASTG	6 cut(s)	355, 856, 985, 1108, 1305, 1447
TseFI	GTSAC	4 cut(s)	663, 718, 1117, 1271
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	4 cut(s)	663, 718, 1117, 1271
TspDTI	ATGAA	7 cut(s)	31, 103, 288, 900, 950, 1155, 1173
TspRI	CASTG	6 cut(s)	355, 856, 985, 1108, 1305, 1447
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	472, 1312
XagI	CCTNNNNNAGG	1 cut(s)	1292
XapI	RAATTY	4 cut(s)	355, 761, 1342, 1399
XceI	RCATGY	1 cut(s)	1285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	2 cut(s)	833, 1214
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.