Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005030.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1096 .. 2160

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005030.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgcagactcaaaaagaggatgatatgatagaggaagaagagaaagatgaggaagaaatatgtgaccagcagactggaaagaagaggcggagaagttgttcatcagttaaatgtgggtgtgaggctagtatgcgagttcttcatgacaaatggactaacaaatggaaagtatcagttttcagtgacattcacaatcacaaaattgtgacaccagctcgtaggatgatgatgaagtcgaatacacatatgcccaatgcagcaaaagatttaacagaagcttttcaaaaagagaacttacaaatcagtaaagttccttcaatgtttggtggtgctcaaaatgttggttttgataatagggactgttataatcatttaaggaacgtgaggcacaaagagttggaatatggagatgcacaatcagtcctcaattactttaggaaaaagcaagcagaaaatccacagttcttttatgctatccagtgtgatgaagatggtagagctactaattttttctgggtggattctagatcaaggacggcgtatcaatattttggggatgtagtgacattcgatacaacatatcagacaaataagtatgacatgccatttgccccatttactggagtaaaccatcacttccaatccatacaatttggatgttcccttttgcaagatgagacggatgcgacatttctatggttatttgagacctggcttgaagctatgggaggtcgacatccattatgtgttatcactgatcaagatttggcaatgaaaggagcaatagctaaaatttttcccaatactcgtcatcgcctctgcatttggcatataaagaaaaaatttggtgaaaagttgtcacatgtatattataaaaagtctgatttcaagactagcatgaaaaagtgtatatgggcaacatacagaattgaggattttgaagagcaatggaagaagttgattgaggagcatgaattggaacaaaatgaatggctacaacaactttatgaaattcgtgaatctcggttccagtatataatcacaacacattttttgccggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

354

Amino Acids

42.12

Weight (kDa)

6.55

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	366, 873
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	733
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	792, 842, 1011
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	284, 318, 719, 889, 941
AjnI	CCWGG	1 cut(s)	710
AloI	GAACNNNNNNTCC	2 cut(s)	82, 114
AluBI	AGCT	5 cut(s)	215, 278, 500, 722, 788
AluI	AGCT	5 cut(s)	215, 278, 500, 722, 788
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	671, 701
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	792, 842, 1011
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
Asp700I	GAANNNNTTC	2 cut(s)	97, 279
AsuHPI	GGTGA	1 cut(s)	860
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	2 cut(s)	485, 639
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	1 cut(s)	712
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	671, 701
BfaI	CTAG	3 cut(s)	126, 525, 894
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	1028
BmrFI	CCNGG	1 cut(s)	712
BmsI	GCATC	2 cut(s)	400, 673
BpmI	CTGGAG	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	4 cut(s)	79, 478, 625, 1030
Bse3DI	GCAATG	2 cut(s)	777, 953
BseBI	CCWGG	1 cut(s)	712
BseGI	GGATG	6 cut(s)	25, 228, 562, 662, 688, 736
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	2 cut(s)	777, 953
BseNI	ACTGG	4 cut(s)	79, 478, 625, 1030
BseRI	GAGGAG	1 cut(s)	980
BseXI	GCAGC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	1058
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	671, 701
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	527, 757
BspACI	CCGC	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	1028
BspQI	GCTCTTC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	2 cut(s)	777, 953
BsrI	ACTGG	4 cut(s)	79, 478, 625, 1030
BssMI	GATC	2 cut(s)	527, 757
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	2 cut(s)	362, 462
Bst6I	CTCTTC	3 cut(s)	33, 77, 936
BstC8I	GCNNGC	1 cut(s)	447
BstF5I	GGATG	6 cut(s)	25, 228, 562, 662, 688, 736
BstKTI	GATC	2 cut(s)	530, 760
BstMAI	GTCTC	2 cut(s)	671, 701
BstMBI	GATC	2 cut(s)	527, 757
BstNI	CCWGG	1 cut(s)	712
BstNSI	RCATGY	2 cut(s)	604, 866
BstSCI	CCNGG	1 cut(s)	710
BstV1I	GCAGC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	797
BtsCI	GGATG	6 cut(s)	25, 228, 562, 662, 688, 736
BtsIMutI	CAGTG	3 cut(s)	187, 485, 753
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	142
CviAII	CATG	5 cut(s)	143, 601, 863, 898, 971
CviJI	RGCY	8 cut(s)	125, 215, 278, 500, 715, 722, 788, 994
CviKI_1	RGCY	8 cut(s)	125, 215, 278, 500, 715, 722, 788, 994
DpnI	GATC	2 cut(s)	529, 759
DpnII	GATC	2 cut(s)	527, 757
Eam1104I	CTCTTC	3 cut(s)	33, 77, 936
EarI	CTCTTC	3 cut(s)	33, 77, 936
EciI	GGCGGA	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	710
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	5 cut(s)	146, 604, 866, 901, 974
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	5 cut(s)	142, 600, 862, 897, 970
FauNDI	CATATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	6 cut(s)	32, 235, 569, 669, 695, 723
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	126, 525, 894
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	642
HapII	CCGG	1 cut(s)	1058
Hin1II	CATG	5 cut(s)	146, 604, 866, 901, 974
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	3 cut(s)	7, 521, 1019
HpaII	CCGG	1 cut(s)	1058
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	2 cut(s)	628, 734
Hpy188I	TCNGA	2 cut(s)	585, 883
Hpy188III	TCNNGA	5 cut(s)	143, 525, 761, 889, 1016
Hpy8I	GTNNAC	2 cut(s)	628, 734
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	362, 462
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	5 cut(s)	4, 257, 413, 670, 822
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	146, 604, 866, 901, 974
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	2 cut(s)	527, 757
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	2 cut(s)	779, 967
LpnPI	CCDG	9 cut(s)	60, 80, 225, 491, 499, 606, 697, 724, 1043
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	400, 673
MaeI	CTAG	3 cut(s)	126, 525, 894
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	5 cut(s)	62, 182, 205, 562, 858
MalI	GATC	2 cut(s)	529, 759
MboI	GATC	2 cut(s)	527, 757
MboII	GAAGA	8 cut(s)	47, 50, 65, 94, 131, 500, 953, 964
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	9 cut(s)	201, 427, 505, 650, 792, 842, 927, 974, 1011
MmeI	TCCRAC	1 cut(s)	378
MroXI	GAANNNNTTC	2 cut(s)	97, 279
MseI	TTAA	3 cut(s)	108, 269, 374
MslI	CAYNNNNRTG	1 cut(s)	694
MspI	CCGG	1 cut(s)	1058
MspR9I	CCNGG	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	712
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	2 cut(s)	527, 757
NlaIII	CATG	5 cut(s)	146, 604, 866, 901, 974
NlaIV	GGNNCC	1 cut(s)	1028
NmuCI	GTSAC	5 cut(s)	62, 182, 205, 562, 858
NspI	RCATGY	2 cut(s)	604, 866
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	936
PdmI	GAANNNNTTC	2 cut(s)	97, 279
PfeI	GAWTC	2 cut(s)	521, 1019
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	862
PsiI	TTATAA	2 cut(s)	366, 873
Psp6I	CCWGG	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	1 cut(s)	1028
RseI	CAYNNNNRTG	1 cut(s)	694
SalI	GTCGAC	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	3 cut(s)	108, 269, 374
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	527, 757
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	8 cut(s)	217, 280, 384, 502, 713, 724, 733, 790
SfaNI	GCATC	2 cut(s)	400, 673
SmiMI	CAYNNNNRTG	1 cut(s)	694
Sse9I	AATT	9 cut(s)	201, 427, 505, 650, 792, 842, 927, 974, 1011
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	3 cut(s)	126, 525, 894
StyD4I	CCNGG	1 cut(s)	710
TaaI	ACNGT	2 cut(s)	362, 462
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	236, 570, 733
TasI	AATT	9 cut(s)	201, 427, 505, 650, 792, 842, 927, 974, 1011
TfiI	GAWTC	2 cut(s)	521, 1019
Tru1I	TTAA	3 cut(s)	108, 269, 374
Tru9I	TTAA	3 cut(s)	108, 269, 374
TscAI	CASTG	3 cut(s)	187, 485, 760
TseFI	GTSAC	5 cut(s)	62, 182, 205, 562, 858
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	5 cut(s)	62, 182, 205, 562, 858
TspDTI	ATGAA	9 cut(s)	90, 131, 245, 501, 788, 914, 987, 1002, 1023
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	3 cut(s)	187, 485, 760
Van91I	CCANNNNNTGG	1 cut(s)	620
XapI	RAATTY	3 cut(s)	792, 842, 1011
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	2 cut(s)	604, 866
XmiI	GTMKAC	1 cut(s)	733
XmnI	GAANNNNTTC	2 cut(s)	97, 279
XspI	CTAG	3 cut(s)	126, 525, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.