Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

14586718 .. 14588064

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22662.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAGAAAGTGCATATGGGATACATACCGAATAGATGATTTTGAAGATCAATGGAAGAAGTTAATGGAGGAGTATAAATTGGAACAAAATGAATGGCTACAACAGCTTCATGAAATTCGTGAGTCTTGGGTTCCAGTGTATAACCGCAACACATTTTTTGCCGGAATGAATACAACAGGGCGCAGTGAAGGCACCAATGCATTTTTTGATGATTTTGTTACGTCAACGACCAATCTGAAAGAATTTGTTATCAAGTATGAACAAGCCTTACAGAAAATTATTACAAGGGAAAGCAACAAAGATTTTATATCAGAGCATAAGTACCGTATTGTGGATGATGATGACTTTCTTTTGAAACATGCAGCACATGTGTACACCCGAAATATATTTGAAAAATTCAAGAGGGAGTGGTCTAGAGTCAAAAGGCTCAAAGTTGAAGAAAAAGGTTCTGACAATCATTTTCACAGATACTCGGTCATGAAGAAAACTGAAAACTCAAAAGAGTTTATGGTGGAGATGGATTTACAAACACAAGAGGGTAAGTGTGAATGCCAAAATTTTGAGTTTGTGGGAATAATTTGTCGGCATATTATGAAAGCATTTGTGCGTCAAGACATTGATATCATACCATCCCACTTTATTCTTCCAAGATGGAGGCAAGGGGCAAATAAGTTTAGAGTCACGGATTCTGAAGCCTTGGTAAAGAATGATGATAAAGAACAATCAGAAGCATTGAGATTTAGTCATATGTGTCGGAGAGCTACTCAACTAGCTTGTCATGCTGCACCTTCAGATGAGGCCTACAAAATGTATATGGATGGTTTAGATGAATTGTCAAACAAAATTTCGGAAGTCAATAAGGTGACAAAAGAGGTTGCTATAGAGTCTGAAGACCATGTTTTCCAAGATGAAGTAGATCAATGTGCGAGTAAGTCTTCTGAGTCATTGCTTTTGGATCCGAATATCTCAAAAACAAAGGGTAGAAAGAAGGACGACAATAGTACAAGAAACACAAACAGCTCTAAGAGGATAAAAAGTGGTATGGAGTTGGCTCAAAGCAAGAAGAGAAAGTGTACAATGTATCAACAAACAGGACATAATAAACTTACTTGCATTTTAAACCCGGATGCAAAAAGAAACATGAATGCTTCTACGAATCAAAGGAATAAGAATATGCAAGAGTCAGACGAAGAAACTTCAGAGGAAAAAGATTCAGACAGTAGCCATCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

412

Amino Acids

48.47

Weight (kDa)

6.39

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	2 cut(s)	950, 963
AcsI	RAATTY	5 cut(s)	114, 242, 395, 556, 843
AcuI	CTGAAG	4 cut(s)	711, 774, 909, 1182
AfaI	GTAC	4 cut(s)	323, 374, 1003, 1075
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	44, 355, 392, 400, 437
AluBI	AGCT	4 cut(s)	106, 761, 773, 1020
AluI	AGCT	4 cut(s)	106, 761, 773, 1020
AlwI	GGATC	2 cut(s)	950, 963
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	362, 782
ApoI	RAATTY	5 cut(s)	114, 242, 395, 556, 843
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	1124
AsuHPI	GGTGA	1 cut(s)	874
BamHI	GGATCC	1 cut(s)	955
BanI	GGYRCC	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	897, 927
BbvI	GCAGC	2 cut(s)	374, 769
BccI	CCATC	5 cut(s)	511, 637, 645, 812, 1233
BciVI	GTATCC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	1124
BfaI	CTAG	2 cut(s)	414, 770
BfmI	CTRYAG	1 cut(s)	879
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	2 cut(s)	363, 783
BlsI	GCNGC	2 cut(s)	364, 784
Bme1390I	CCNGG	1 cut(s)	1124
BmiI	GGNNCC	3 cut(s)	132, 193, 957
BmrFI	CCNGG	1 cut(s)	1124
BmsI	GCATC	1 cut(s)	1117
BpiI	GAAGAC	2 cut(s)	897, 927
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpuMI	CCSGG	1 cut(s)	1124
BsaJI	CCNNGG	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	944
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	4 cut(s)	340, 629, 823, 1132
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	374, 769
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	800
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	162, 1124
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmI	GAATGC	2 cut(s)	554, 1150
BsnI	GGCC	1 cut(s)	800
Bsp1407I	TGTACA	2 cut(s)	372, 1073
Bsp143I	GATC	3 cut(s)	46, 916, 955
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	1 cut(s)	931
BspHI	TCATGA	2 cut(s)	109, 477
BspLI	GGNNCC	3 cut(s)	132, 193, 957
BspPI	GGATC	2 cut(s)	950, 963
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	944
BsrGI	TGTACA	2 cut(s)	372, 1073
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	46, 916, 955
BssT1I	CCWWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	326, 1220
Bst6I	CTCTTC	1 cut(s)	1058
BstAUI	TGTACA	2 cut(s)	372, 1073
BstDEI	CTNAG	2 cut(s)	939, 1023
BstF5I	GGATG	4 cut(s)	340, 629, 823, 1132
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	49, 919, 958
BstMBI	GATC	3 cut(s)	46, 916, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 189, 779
BstNSI	RCATGY	2 cut(s)	362, 371
BstSCI	CCNGG	1 cut(s)	1122
BstSFI	CTRYAG	1 cut(s)	879
BstV1I	GCAGC	2 cut(s)	374, 769
BstV2I	GAAGAC	2 cut(s)	897, 927
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	4 cut(s)	340, 629, 823, 1132
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	141, 190
CciI	TCATGA	2 cut(s)	109, 477
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	4 cut(s)	322, 373, 1002, 1074
CviAII	CATG	7 cut(s)	110, 359, 368, 478, 779, 896, 1141
CviQI	GTAC	4 cut(s)	322, 373, 1002, 1074
DdeI	CTNAG	2 cut(s)	939, 1023
DpnI	GATC	3 cut(s)	48, 918, 957
DpnII	GATC	3 cut(s)	46, 916, 955
DraI	TTTAAA	1 cut(s)	1119
Eam1104I	CTCTTC	1 cut(s)	1058
EarI	CTCTTC	1 cut(s)	1058
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	800
Eco32I	GATATC	1 cut(s)	622
Eco57I	CTGAAG	4 cut(s)	711, 774, 909, 1182
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	7 cut(s)	113, 362, 371, 481, 782, 899, 1144
FatI	CATG	7 cut(s)	109, 358, 367, 477, 778, 895, 1140
FauNDI	CATATG	2 cut(s)	14, 747
Fnu4HI	GCNGC	2 cut(s)	363, 783
FokI	GGATG	4 cut(s)	347, 616, 830, 1139
Fsp4HI	GCNGC	2 cut(s)	363, 783
FspBI	CTAG	2 cut(s)	414, 770
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	363, 783
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	2 cut(s)	162, 1124
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	113, 362, 371, 481, 782, 899, 1144
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	9 cut(s)	122, 417, 678, 686, 884, 941, 1156, 1181, 1211
HpaII	CCGG	2 cut(s)	162, 1124
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	4 cut(s)	225, 373, 375, 1074
Hpy188III	TCNNGA	7 cut(s)	110, 119, 400, 414, 478, 611, 1229
Hpy8I	GTNNAC	4 cut(s)	225, 373, 375, 1074
HpyAV	CCTTC	3 cut(s)	182, 798, 982
HpyCH4III	ACNGT	2 cut(s)	326, 1220
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	7 cut(s)	12, 200, 362, 785, 1113, 1130, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 189, 779
HpyF3I	CTNAG	2 cut(s)	939, 1023
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	7 cut(s)	113, 362, 371, 481, 782, 899, 1144
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	46, 916, 955
LpnPI	CCDG	5 cut(s)	147, 162, 175, 1077, 1137
Lsp1109I	GCAGC	2 cut(s)	374, 769
LweI	GCATC	1 cut(s)	1117
MaeI	CTAG	2 cut(s)	414, 770
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	217, 679, 862
MalI	GATC	3 cut(s)	48, 918, 957
MboI	GATC	3 cut(s)	46, 916, 955
MboII	GAAGA	9 cut(s)	56, 67, 449, 493, 635, 902, 927, 1075, 1202
MflI	RGATCY	1 cut(s)	955
MluCI	AATT	9 cut(s)	77, 114, 242, 276, 395, 556, 576, 830, 843
MlyI	GAGTC	6 cut(s)	131, 426, 687, 893, 950, 1190
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	8 cut(s)	61, 396, 529, 648, 790, 865, 1020, 1195
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	2 cut(s)	62, 1118
MspI	CCGG	2 cut(s)	162, 1124
MspR9I	CCNGG	1 cut(s)	1124
Mva1269I	GAATGC	2 cut(s)	554, 1150
MwoI	GCNNNNNNNGC	3 cut(s)	103, 189, 779
NciI	CCSGG	1 cut(s)	1124
NdeI	CATATG	2 cut(s)	14, 747
NdeII	GATC	3 cut(s)	46, 916, 955
NlaIII	CATG	7 cut(s)	113, 362, 371, 481, 782, 899, 1144
NlaIV	GGNNCC	3 cut(s)	132, 193, 957
NmuCI	GTSAC	2 cut(s)	679, 862
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	2 cut(s)	362, 371
PagI	TCATGA	2 cut(s)	109, 477
PceI	AGGCCT	1 cut(s)	800
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	2 cut(s)	554, 1150
PfeI	GAWTC	3 cut(s)	686, 1156, 1211
PkrI	GCNGC	2 cut(s)	364, 784
PleI	GAGTC	6 cut(s)	130, 425, 686, 892, 949, 1189
PpsI	GAGTC	6 cut(s)	130, 425, 686, 892, 949, 1189
PscI	ACATGT	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	132, 193, 957
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	4 cut(s)	323, 374, 1003, 1075
RsaNI	GTAC	4 cut(s)	322, 373, 1002, 1074
SaqAI	TTAA	2 cut(s)	62, 1118
SatI	GCNGC	2 cut(s)	363, 783
Sau3AI	GATC	3 cut(s)	46, 916, 955
SchI	GAGTC	6 cut(s)	131, 426, 687, 893, 950, 1190
ScrFI	CCNGG	1 cut(s)	1124
SetI	ASST	9 cut(s)	108, 224, 448, 763, 775, 790, 864, 876, 1022
SfaNI	GCATC	1 cut(s)	1117
SfcI	CTRYAG	1 cut(s)	879
Sse9I	AATT	9 cut(s)	77, 114, 242, 276, 395, 556, 576, 830, 843
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	2 cut(s)	414, 770
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	1 cut(s)	1122
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	326, 1220
TaiI	ACGT	1 cut(s)	224
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	9 cut(s)	77, 114, 242, 276, 395, 556, 576, 830, 843
TatI	WGTACW	3 cut(s)	372, 1001, 1073
TfiI	GAWTC	3 cut(s)	686, 1156, 1211
Tru1I	TTAA	2 cut(s)	62, 1118
Tru9I	TTAA	2 cut(s)	62, 1118
TscAI	CASTG	2 cut(s)	141, 190
TseFI	GTSAC	2 cut(s)	679, 862
TseI	GCWGC	2 cut(s)	362, 782
Tsp45I	GTSAC	2 cut(s)	679, 862
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	141, 190
XapI	RAATTY	5 cut(s)	114, 242, 395, 556, 843
XbaI	TCTAGA	1 cut(s)	413
XceI	RCATGY	2 cut(s)	362, 371
XspI	CTAG	2 cut(s)	414, 770
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.