FvH4_2g15201

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004837
Physical Location & Seq
Reverse (-)
13394181 .. 13395055
875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15201.t1

Sequence Viewer

Length: 771 bp
ATGAAGAAAACTGAGAACTCAAAAGAGTTTTTGGTGGAGTTGAATTTGCAAACACATGAGGGTAAATGTGAATGCCAAAATTTTGAATTTGTCGGAATAATTTGTCGGCATATTATGAAGGTGTTTGTTCGTCAAGATATCGATACAATACCATCCCACTTTATTCTTCCCAGATGGAGGCAAGGAGCAAATAAGTTTAGAGTTATGGATTCTGAAGCCTTAGTAAAGAATGATGGTAAGGAGCATTCAGAAGCATTGCGATTTAGTCATATGTGTCGAAGAGCCACTCAACTAGCTTGTTATGCAGCACCCTCTAATGAGGCCTACACAATTTACATGGATGGTTTGGATGAATTGTCAAAAAAAATTTCAGAAGTTAATAAGGTGTCAGAAGAAGATGTTATGGAGTCTGAAGATGATGTTTTCCAAGATGAAGCAGATCAATGTACAAGTAAGTCTTCCAAGCAATTACTTTTGGATCCAAATATCTCAAAAACTAAAGGTAGAAAGAAGGATGAGAATAGCAGAAGGAAAACAAAAAGTTCTAAAAGGATTAAAGGTGGCATGGAGTTGGCTCAAAACAAGAAGAGAAAGTGTACAATGTGTCAACAGCCAGGACATAATAGGCTTACTTGCACTTTAAATCCAGATGCAAAAAGAAAACCGAGTGCTTCTACAGATCAAAGGAATAAGAATATGTTGGAGCCAAACAGAGTTTTGGACGAGGAAGATTCAGATGAGGAAGCTTCAGACAGTGACCATGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

257

Amino Acids

29.45

Weight (kDa)

6.42

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 21 - 42 1e-05 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 473, 486
AcsI RAATTY 4 cut(s) 43, 79, 86, 366
AcuI CTGAAG 3 cut(s) 234, 432, 732
AfaI GTAC 2 cut(s) 448, 598
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 43, 86
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 2 cut(s) 296, 746
AluI AGCT 2 cut(s) 296, 746
AlwI GGATC 2 cut(s) 473, 486
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 4 cut(s) 43, 79, 86, 366
BamHI GGATCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 317
BccI CCATC 4 cut(s) 160, 168, 227, 335
BciT130I CCWGG 1 cut(s) 615
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 615
BmiI GGNNCC 2 cut(s) 480, 705
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 450
Bsa29I ATCGAT 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 141
BseGI GGATG 4 cut(s) 152, 346, 355, 520
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 177
BsmI GAATGC 2 cut(s) 77, 244
BsnI GGCC 1 cut(s) 323
Bsp1407I TGTACA 2 cut(s) 446, 596
Bsp143I GATC 3 cut(s) 439, 478, 679
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 480, 705
BspPI GGATC 2 cut(s) 473, 486
BspQI GCTCTTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 254
BsrGI TGTACA 2 cut(s) 446, 596
BssMI GATC 3 cut(s) 439, 478, 679
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 755
Bst6I CTCTTC 2 cut(s) 274, 581
BstAUI TGTACA 2 cut(s) 446, 596
BstDEI CTNAG 2 cut(s) 12, 220
BstF5I GGATG 4 cut(s) 152, 346, 355, 520
BstKTI GATC 3 cut(s) 442, 481, 682
BstMBI GATC 3 cut(s) 439, 478, 679
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 323
BsuTUI ATCGAT 1 cut(s) 141
BtsCI GGATG 4 cut(s) 152, 346, 355, 520
BtsIMutI CAGTG 1 cut(s) 760
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 2 cut(s) 447, 597
CviAII CATG 4 cut(s) 56, 337, 565, 761
CviJI RGCY 9 cut(s) 218, 284, 296, 323, 575, 613, 628, 706, 746
CviKI_1 RGCY 9 cut(s) 218, 284, 296, 323, 575, 613, 628, 706, 746
CviQI GTAC 2 cut(s) 447, 597
DdeI CTNAG 2 cut(s) 12, 220
DpnI GATC 3 cut(s) 441, 480, 681
DpnII GATC 3 cut(s) 439, 478, 679
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 274, 581
EarI CTCTTC 2 cut(s) 274, 581
Eco147I AGGCCT 1 cut(s) 323
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 3 cut(s) 234, 432, 732
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 139
FaeI CATG 4 cut(s) 59, 340, 568, 764
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 4 cut(s) 55, 336, 564, 760
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 4 cut(s) 139, 353, 362, 527
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 4 cut(s) 59, 340, 568, 764
HincII GTYRAC 1 cut(s) 608
HindII GTYRAC 1 cut(s) 608
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 3 cut(s) 209, 407, 731
Hpy166II GTNNAC 2 cut(s) 597, 608
Hpy188I TCNGA 8 cut(s) 95, 214, 250, 373, 391, 412, 736, 751
Hpy188III TCNNGA 2 cut(s) 134, 647
Hpy8I GTNNAC 2 cut(s) 597, 608
HpyAV CCTTC 3 cut(s) 112, 505, 522
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4V TGCA 4 cut(s) 49, 305, 636, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 12, 220
Hsp92II CATG 4 cut(s) 59, 340, 568, 764
Kzo9I GATC 3 cut(s) 439, 478, 679
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 3 cut(s) 185, 241, 703
LpnPI CCDG 4 cut(s) 184, 600, 627, 660
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 640
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 755
MalI GATC 3 cut(s) 441, 480, 681
MboI GATC 3 cut(s) 439, 478, 679
MboII GAAGA 9 cut(s) 16, 158, 291, 404, 407, 425, 450, 598, 740
MflI RGATCY 1 cut(s) 478
MluCI AATT 8 cut(s) 43, 79, 86, 99, 330, 353, 366, 467
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 73, 681
MnlI CCTC 7 cut(s) 52, 171, 313, 322, 718, 733, 757
MseI TTAA 3 cut(s) 378, 555, 641
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 77, 244
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 439, 478, 679
NlaIII CATG 4 cut(s) 59, 340, 568, 764
NlaIV GGNNCC 2 cut(s) 480, 705
NmuCI GTSAC 1 cut(s) 755
PceI AGGCCT 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 274
PctI GAATGC 2 cut(s) 77, 244
PfeI GAWTC 2 cut(s) 209, 731
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 480, 705
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 2 cut(s) 448, 598
RsaNI GTAC 2 cut(s) 447, 597
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 378, 555, 641
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 439, 478, 679
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 615
SetI ASST 6 cut(s) 123, 298, 387, 505, 562, 748
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 675
Sse9I AATT 8 cut(s) 43, 79, 86, 99, 330, 353, 366, 467
SseBI AGGCCT 1 cut(s) 323
SspMI CTAG 1 cut(s) 293
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 1 cut(s) 755
TaqI TCGA 2 cut(s) 141, 277
TasI AATT 8 cut(s) 43, 79, 86, 99, 330, 353, 366, 467
TatI WGTACW 2 cut(s) 446, 596
TfiI GAWTC 2 cut(s) 209, 731
Tru1I TTAA 3 cut(s) 378, 555, 641
Tru9I TTAA 3 cut(s) 378, 555, 641
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 4 cut(s) 17, 131, 366, 447
TspRI CASTG 1 cut(s) 760
XapI RAATTY 4 cut(s) 43, 79, 86, 366
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.