FvH4_5g31091

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004837
Physical Location & Seq
Reverse (-)
22015607 .. 22018148
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31091.t1

Sequence Viewer

Length: 1326 bp
ATGGACTTAACTTCAGAAGATGGCAATCTTGGATCCTCAATGAACCGATTATCAAGCGACGAGGCCGATGGTAAACATGCAATGCAAAATCCAAAGGAGGATGTTCTGAAACAGAAAGACGAGATAGATGAGAACGATGAGGGAGAAACATGTGACCTACAGATCGAAAAGAAAAGGCATAGAAGTTGTTCAACTGTTAAATGTGGGTGTGAGGCTAATATGCGAGTCCTTCATGATAAATGGACTAATAAGTGGAAGATGTGGCTTGAAGCTATGGGAGGTCGACATCCATTATGTATTATCACTAACCAAGATTTGGCAATGAAAGGAGCAATTGCTGAGATTTTTCCCAATACTCGTCATCGCCTTTGCATTTGGCATATAAAGAAAAAGTTTGGTGAAAAATTGGCACATGTTTATTATAAAAAGTCCAACTTCCAGACTAGCATGAAAAAGTGTATATGGGCAACATACAAAGTAGAGGATTTTGAAGAGCAATGGAAGAAACTGATTGATGAGCATGGATTAGGAAACAATGAATGGCTACAGCAACTATATGAAATTCGTGAATCTTGGGTTCCAGTATATAACCGCAACACATTTTTTGCCGGAATGAATACAACAAGGCATAGTGAAGGCACTAATGCATTTTTTGATGACTTTGTCACATCAACGACAAATCTGAGAGAGTTTGTTGTGAAGTATGAACAAGCCTTACATAAGATTGTTGCAAGGGAAAGTAGCGAGGATTTTACATCAGAGCATAAATATCGTATTGTGGATGATGATGACTTTCTTTTGAAACATGCAACACATGTGTTTGTTCGTCAAGATATCGATCCAATACCAACCGACTTTATTCTTCCCAGATGGAGGCAAGGAGCAAATAAGTTTAGAGTTATGGATTCTGAAGCCTTAGTAAAGAATGATGTTAATAAGGTGTCAAAAGAAGATGTTATGGAGTCTGAAGATGATGTTTTCCAAGATGAAGCAGATCAATGTACAAGTAAGTCTTCTGAGCAATTACTTTTAGATCCAAATATCTCAAAAACTAAGGGTAGAAAGAAGGATGAGAATAGCAGAAGAAAAACAAAAAGTTCTAAAAGGATTAAAGGTGGCATGGAGTTGGCTCAAAACAAGAAGAGAAAGTGTACAATGTGTCAACAGCCAGGACATAATAGGCTTACTTGCACTTTAAATCCAGATGCAAAAAGAAAACCGAGTGCTTCTACAGATCAAAGGAATAAGAATATGTTGGAGTCAGATAGAGTTTTGGACGAGGAAGATTCAGATGAGGAAGCTTCAAACAGTGACCATGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

442

Amino Acids

51.3

Weight (kDa)

6.07

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 85 - 131 8.9e-12 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 283
AciI CCGC 1 cut(s) 592
AclWI GGATC 4 cut(s) 27, 40, 833, 1028
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 2 cut(s) 930, 987
AfaI GTAC 2 cut(s) 1003, 1153
AfiI CCNNNNNNNGG 2 cut(s) 316, 873
AflIII ACRYGT 3 cut(s) 149, 412, 814
AgsI TTSAA 5 cut(s) 192, 269, 491, 802, 1305
AjnI CCWGG 1 cut(s) 1168
AluBI AGCT 2 cut(s) 272, 1301
AluI AGCT 2 cut(s) 272, 1301
AlwI GGATC 4 cut(s) 27, 40, 833, 1028
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 1005
BccI CCATC 3 cut(s) 14, 62, 864
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 1170
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 3 cut(s) 158, 545, 1230
Bme1390I CCNGG 1 cut(s) 1170
BmiI GGNNCC 2 cut(s) 34, 579
BmrFI CCNGG 1 cut(s) 1170
BmsI GCATC 1 cut(s) 1195
BpiI GAAGAC 1 cut(s) 1005
Bsa29I ATCGAT 1 cut(s) 837
BsaBI GATNNNNATC 2 cut(s) 24, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 873
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 3 cut(s) 87, 327, 503
Bse8I GATNNNNATC 2 cut(s) 24, 837
BseBI CCWGG 1 cut(s) 1170
BseCI ATCGAT 1 cut(s) 837
BseGI GGATG 4 cut(s) 106, 286, 787, 1075
BseJI GATNNNNATC 2 cut(s) 24, 837
BseLI CCNNNNNNNGG 2 cut(s) 316, 873
BseMI GCAATG 3 cut(s) 87, 327, 503
BseMII CTCAG 3 cut(s) 330, 674, 1008
BseNI ACTGG 1 cut(s) 581
BshFI GGCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 837
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 316, 873
BsnI GGCC 1 cut(s) 65
Bsp1407I TGTACA 2 cut(s) 1001, 1151
Bsp143I GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
BspACI CCGC 1 cut(s) 592
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 331, 675, 1009
BspDI ATCGAT 1 cut(s) 837
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 34, 579
BspPI GGATC 4 cut(s) 27, 40, 833, 1028
BspQI GCTCTTC 1 cut(s) 486
BsrDI GCAATG 3 cut(s) 87, 327, 503
BsrGI TGTACA 2 cut(s) 1001, 1151
BsrI ACTGG 1 cut(s) 581
BssMI GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 2 cut(s) 196, 1310
Bst6I CTCTTC 2 cut(s) 486, 1136
BstAUI TGTACA 2 cut(s) 1001, 1151
BstDEI CTNAG 5 cut(s) 339, 683, 916, 1017, 1053
BstF5I GGATG 4 cut(s) 106, 286, 787, 1075
BstKTI GATC 6 cut(s) 35, 165, 841, 997, 1036, 1237
BstMBI GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
BstNI CCWGG 1 cut(s) 1170
BstNSI RCATGY 5 cut(s) 80, 153, 416, 809, 818
BstSCI CCNGG 1 cut(s) 1168
BstSFI CTRYAG 3 cut(s) 158, 545, 1230
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 2 cut(s) 32, 1033
BstYI RGATCY 2 cut(s) 32, 1033
Bsu15I ATCGAT 1 cut(s) 837
BsuRI GGCC 1 cut(s) 65
BsuTUI ATCGAT 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 4 cut(s) 106, 286, 787, 1075
BtsIMutI CAGTG 1 cut(s) 1315
CciI TCATGA 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 2 cut(s) 1002, 1152
CviQI GTAC 2 cut(s) 1002, 1152
DdeI CTNAG 5 cut(s) 339, 683, 916, 1017, 1053
DpnI GATC 6 cut(s) 34, 164, 840, 996, 1035, 1236
DpnII GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
DraI TTTAAA 1 cut(s) 1197
Eam1104I CTCTTC 2 cut(s) 486, 1136
EarI CTCTTC 2 cut(s) 486, 1136
Eco32I GATATC 1 cut(s) 835
Eco57I CTGAAG 2 cut(s) 930, 987
EcoRII CCWGG 1 cut(s) 1168
EcoRV GATATC 1 cut(s) 835
EcoT22I ATGCAT 1 cut(s) 649
FalI AAGNNNNNCTT 4 cut(s) 419, 451, 997, 1029
FblI GTMKAC 1 cut(s) 283
FokI GGATG 4 cut(s) 113, 273, 794, 1082
FspBI CTAG 1 cut(s) 444
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 609
HincII GTYRAC 2 cut(s) 284, 1163
HindII GTYRAC 2 cut(s) 284, 1163
HindIII AAGCTT 1 cut(s) 1299
HinfI GANTC 6 cut(s) 225, 569, 905, 962, 1259, 1286
HpaII CCGG 1 cut(s) 609
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 4 cut(s) 74, 284, 1152, 1163
Hpy188I TCNGA 9 cut(s) 16, 108, 684, 760, 910, 967, 1018, 1264, 1291
Hpy188III TCNNGA 5 cut(s) 233, 439, 566, 830, 1202
Hpy8I GTNNAC 4 cut(s) 74, 284, 1152, 1163
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 239, 629, 1060
HpyCH4III ACNGT 2 cut(s) 196, 1310
HpyCH4V TGCA 8 cut(s) 80, 85, 372, 647, 731, 809, 1191, 1208
HpyF3I CTNAG 5 cut(s) 339, 683, 916, 1017, 1053
Kzo9I GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 329, 881
LpnPI CCDG 7 cut(s) 452, 594, 622, 880, 1155, 1182, 1215
LweI GCATC 1 cut(s) 1195
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 152, 664, 1310
MalI GATC 6 cut(s) 34, 164, 840, 996, 1035, 1236
MboI GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 2 cut(s) 32, 1033
MluCI AATT 4 cut(s) 333, 404, 561, 1022
MlyI GAGTC 3 cut(s) 234, 971, 1268
MmeI TCCRAC 2 cut(s) 456, 1236
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 5 cut(s) 8, 198, 933, 1110, 1196
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 1170
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 1170
NdeII GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
NlaIV GGNNCC 2 cut(s) 34, 579
NmuCI GTSAC 3 cut(s) 152, 664, 1310
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 5 cut(s) 80, 153, 416, 809, 818
PagI TCATGA 1 cut(s) 232
PciI ACATGT 3 cut(s) 149, 412, 814
PciSI GCTCTTC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 569, 905, 1286
PflFI GACNNNGTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 316
PleI GAGTC 3 cut(s) 233, 970, 1267
PpsI GAGTC 3 cut(s) 233, 970, 1267
PscI ACATGT 3 cut(s) 149, 412, 814
PsiI TTATAA 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 1168
PspGI CCWGG 1 cut(s) 1168
PspN4I GGNNCC 2 cut(s) 34, 579
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PsuI RGATCY 2 cut(s) 32, 1033
PsyI GACNNNGTC 1 cut(s) 662
RsaI GTAC 2 cut(s) 1003, 1153
RsaNI GTAC 2 cut(s) 1002, 1152
SalI GTCGAC 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 5 cut(s) 8, 198, 933, 1110, 1196
Sau3AI GATC 6 cut(s) 32, 162, 838, 994, 1033, 1234
SchI GAGTC 3 cut(s) 234, 971, 1268
ScrFI CCNGG 1 cut(s) 1170
SetI ASST 6 cut(s) 159, 274, 283, 942, 1117, 1303
SfaNI GCATC 1 cut(s) 1195
SfcI CTRYAG 3 cut(s) 158, 545, 1230
Sse9I AATT 4 cut(s) 333, 404, 561, 1022
SsiI CCGC 1 cut(s) 592
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 1168
TaaI ACNGT 2 cut(s) 196, 1310
TaqI TCGA 3 cut(s) 165, 283, 837
TasI AATT 4 cut(s) 333, 404, 561, 1022
TatI WGTACW 2 cut(s) 1001, 1151
TfiI GAWTC 3 cut(s) 569, 905, 1286
Tru1I TTAA 5 cut(s) 8, 198, 933, 1110, 1196
Tru9I TTAA 5 cut(s) 8, 198, 933, 1110, 1196
TscAI CASTG 1 cut(s) 1315
TseFI GTSAC 3 cut(s) 152, 664, 1310
Tsp45I GTSAC 3 cut(s) 152, 664, 1310
TspDTI ATGAA 9 cut(s) 56, 221, 338, 464, 552, 573, 629, 720, 1002
TspRI CASTG 1 cut(s) 1315
Tth111I GACNNNGTC 1 cut(s) 662
Van91I CCANNNNNTGG 1 cut(s) 316
XapI RAATTY 1 cut(s) 561
XceI RCATGY 5 cut(s) 80, 153, 416, 809, 818
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.