Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

17025006 .. 17027324

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G154400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGTATTTGAAACAATGGAAGAAGCAAGAAACTATTATGAAGAGTATGGCCGGCAAGAGGGATTCTGGATTAGAACTCGATTTTCCTCCAAGACGAGAAGGCATTTAGATATGGTAATGAGTAGACAATTTGTTTGTGCACATGAAGGAAAATACGCGCCCAAAAATACATCACAGAAGGCTTTAGAAGAGAATGATGAGAGAGACATAAACTCTCACAATCACAAGCCAGTTACACCGGAAAGAAGATTGAAAATGAAGTCAAATAGGGTTATGCCGAAAGCAGCTAAAATTCTGACTGAAACATTTCATGAAGAAAATTTGCCAATTTCAAAAGTTCCTTCAATCCTTGGTGGCCCGCAGATTGGTTTTAACAATAGAGATTGTTATAACCACTTGAGAAATGTCCAGCATAGACAACTAGATGGAGGAAGAAGCAAGCTGAGAATACTCAATTTTTTTTATGCCATTCAATGTGATGAAAATGGAAGGACAACTAATTTCTTTTGGGTGGATGCTCAATCACGCATGGCGTACCACTATTTTGGAGATGTAGTCACATTTGACACAACCTATAGGACAAACGAGTATGATATGCCATTTGCACCATTCACAGGAGTAAACCACCATTTGCAATCAATACAATTTGGATGTGCACTTTTACAAGATGAGACAGAGGAATTTGAAGAAAAGTGGAAGGAATTGATGAAAGAATGTGAATTGGCTAATGATGACTGGTTGAATAGTTTATATGATATACATTCTTCTTGGGTTCCTGTTTATAATCATAACATATTTTTTGCAGGAATGAACACTACTGGACGTAGTGAGGGTATTAATTCTTTTTTTGATGGATTCATTACACCGACAACAAATCTTAGAGAGTTTGTTGTCAAATATGAGCAAGCACTAAAGAGGATCATGGATAGAGAAAGTGATGAAGATTTTGAATCAGAACACAGGTATCGCATTGTAAATGAAGGAGAATTCCTTTTGAAACATGCATCGAAGTTTTACACTAGAAATGTTTTCAACAAGTTTAAGGATGAATGGAGTAAAGTTACTCTCTTCAAAGTTGAAGAAATTTCATGTGATGACGAATATCATGCATACCTAGTGAAAACAAAACTTGGAGAGCATGAAGAGTTTGTGGTGAAGTTAAACTTGCAAACATACAAAGGTATGTGTGAATGCCAAAATTTTGAGTTTGTTGGAATACTTTGTCGACATTTGTTGAAAGTATTTGTTCGCCTTGATACAGATACACTACTAGACCATTTTATTCTTCCAAGATGGAGACAAGAAGCAAACAAATTTAGAATAATAGATTTTAAAAGTTTGGTGACAAATGATGGTAAAGAAGAATCAGAGGCTTTGCGACTCAGCCATATGTGTCATCGAGCAACAAAGTTGGCTTGCATTGCAGCATCTTCAAATGAGGCATACACAACTTCTATGGAAGCTATAAATGAATTGTCCAAGAAACTGTCAGACAATTTTACTCAGCATGCAACAATTCCTTCCTCAATAACAAGTGATCCATGTAGTACTAATATTGATTCCTCTCAATTGTTGCTTTTGGACCCTAATATCTCACAAACTAAGGGTAGAAAGAAGGACAATATTAGCGGTTCAAAAAGGATAAAAAGTGGTATTGAGTTGGCTCAAAACAAGAAGAAAAGAAAAGTAAGAAGACTTGTGGCAAGATATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

573

Amino Acids

67.01

Weight (kDa)

7.07

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	390, 783
AccI	GTMKAC	2 cut(s)	124, 1225
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	359, 1629
AclWI	GGATC	2 cut(s)	926, 1532
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	7 cut(s)	291, 319, 680, 986, 1083, 1198, 1313
AfaI	GTAC	2 cut(s)	536, 1549
AfiI	CCNNNNNNNGG	3 cut(s)	58, 365, 614
AluBI	AGCT	3 cut(s)	287, 442, 1463
AluI	AGCT	3 cut(s)	287, 442, 1463
Alw21I	GWGCWC	2 cut(s)	142, 658
Alw26I	GTCTC	3 cut(s)	198, 665, 1291
Alw44I	GTGCAC	2 cut(s)	138, 654
AlwI	GGATC	2 cut(s)	926, 1532
AoxI	GGCC	2 cut(s)	49, 355
ApaLI	GTGCAC	2 cut(s)	138, 654
ApeKI	GCWGC	2 cut(s)	284, 1424
ApoI	RAATTY	7 cut(s)	291, 319, 680, 986, 1083, 1198, 1313
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	1 cut(s)	837
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	356, 1582
AsuHPI	GGTGA	2 cut(s)	1165, 1354
AvaII	GGWCC	1 cut(s)	1582
BaeGI	GKGCMC	2 cut(s)	142, 658
BaeI	ACNNNNGTAYC	2 cut(s)	947, 980
BbsI	GAAGAC	1 cut(s)	1699
Bbv12I	GWGCWC	2 cut(s)	142, 658
BbvI	GCAGC	2 cut(s)	296, 1436
BccI	CCATC	4 cut(s)	419, 845, 1287, 1346
BcgI	CGANNNNNNTGC	2 cut(s)	1088, 1122
BcoDI	GTCTC	3 cut(s)	198, 665, 1291
BfaI	CTAG	4 cut(s)	422, 1020, 1115, 1271
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	2 cut(s)	285, 1425
BlsI	GCNGC	2 cut(s)	286, 1426
BmcAI	AGTACT	1 cut(s)	1549
Bme18I	GGWCC	1 cut(s)	1582
BmgT120I	GGNCC	2 cut(s)	356, 1582
BmiI	GGNNCC	2 cut(s)	774, 1584
BmsI	GCATC	3 cut(s)	505, 1013, 1436
BpiI	GAAGAC	1 cut(s)	1699
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 365, 614
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	3 cut(s)	230, 740, 823
Bse3DI	GCAATG	1 cut(s)	1419
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	3 cut(s)	520, 656, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	58, 365, 614
BseMI	GCAATG	1 cut(s)	1419
BseMII	CTCAG	3 cut(s)	434, 1396, 1517
BseNI	ACTGG	3 cut(s)	230, 740, 823
BseSI	GKGCMC	2 cut(s)	142, 658
BseXI	GCAGC	2 cut(s)	296, 1436
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	51, 357
BsiHKAI	GWGCWC	2 cut(s)	142, 658
BsiSI	CCGG	2 cut(s)	52, 239
BslI	CCNNNNNNNGG	3 cut(s)	58, 365, 614
BsmAI	GTCTC	3 cut(s)	198, 665, 1291
BsmI	GAATGC	1 cut(s)	1196
BsnI	GGCC	2 cut(s)	51, 357
Bsp1286I	GDGCHC	2 cut(s)	142, 658
Bsp143I	GATC	2 cut(s)	918, 1537
BspACI	CCGC	2 cut(s)	359, 1629
BspANI	GGCC	2 cut(s)	51, 357
BspCNI	CTCAG	3 cut(s)	435, 1395, 1516
BspFNI	CGCG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	774, 1584
BspPI	GGATC	2 cut(s)	926, 1532
BsrDI	GCAATG	1 cut(s)	1419
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	230, 740, 823
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	918, 1537
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	1488
Bst6I	CTCTTC	4 cut(s)	36, 183, 1073, 1137
BstC8I	GCNNGC	6 cut(s)	53, 359, 440, 906, 1417, 1509
BstDEI	CTNAG	5 cut(s)	443, 878, 1382, 1503, 1602
BstF5I	GGATG	3 cut(s)	520, 656, 1051
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	921, 1540
BstMAI	GTCTC	3 cut(s)	198, 665, 1291
BstMBI	GATC	2 cut(s)	918, 1537
BstMWI	GCNNNNNNNGC	1 cut(s)	1421
BstNSI	RCATGY	2 cut(s)	1004, 1511
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	2 cut(s)	142, 658
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	296, 1436
BstV2I	GAAGAC	1 cut(s)	1699
BstXI	CCANNNNNNTGG	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	51, 357
BtsCI	GGATG	3 cut(s)	520, 656, 1051
Cac8I	GCNNGC	6 cut(s)	53, 359, 440, 906, 1417, 1509
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	356, 1582
Csp6I	GTAC	2 cut(s)	535, 1548
CviQI	GTAC	2 cut(s)	535, 1548
DdeI	CTNAG	5 cut(s)	443, 878, 1382, 1503, 1602
DpnI	GATC	2 cut(s)	920, 1539
DpnII	GATC	2 cut(s)	918, 1537
DraI	TTTAAA	1 cut(s)	1333
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	4 cut(s)	36, 183, 1073, 1137
EarI	CTCTTC	4 cut(s)	36, 183, 1073, 1137
Eco130I	CCWWGG	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	1582
EcoRI	GAATTC	1 cut(s)	986
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	2 cut(s)	1006, 1111
ErhI	CCWWGG	1 cut(s)	349
FalI	AAGNNNNNCTT	2 cut(s)	1148, 1180
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	1389
FblI	GTMKAC	2 cut(s)	124, 1225
Fnu4HI	GCNGC	2 cut(s)	285, 1425
FokI	GGATG	3 cut(s)	527, 663, 1058
Fsp4HI	GCNGC	2 cut(s)	285, 1425
FspBI	CTAG	4 cut(s)	422, 1020, 1115, 1271
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	285, 1425
HaeIII	GGCC	2 cut(s)	51, 357
HapII	CCGG	2 cut(s)	52, 239
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	1226
HindII	GTYRAC	1 cut(s)	1226
HinfI	GANTC	6 cut(s)	63, 855, 950, 1364, 1380, 1559
HpaII	CCGG	2 cut(s)	52, 239
HphI	GGTGA	2 cut(s)	1165, 1354
Hpy166II	GTNNAC	5 cut(s)	125, 140, 622, 656, 1226
Hpy188I	TCNGA	4 cut(s)	297, 955, 1369, 1492
Hpy188III	TCNNGA	2 cut(s)	67, 311
Hpy8I	GTNNAC	5 cut(s)	125, 140, 622, 656, 1226
HpyAV	CCTTC	9 cut(s)	93, 140, 172, 351, 483, 691, 974, 1530, 1609
HpyCH4III	ACNGT	1 cut(s)	1488
HpyCH4IV	ACGT	1 cut(s)	823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1421
HpyF3I	CTNAG	5 cut(s)	443, 878, 1382, 1503, 1602
HpySE526I	ACGT	1 cut(s)	823
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	918, 1537
Lsp1109I	GCAGC	2 cut(s)	296, 1436
LweI	GCATC	3 cut(s)	505, 1013, 1436
MaeI	CTAG	4 cut(s)	422, 1020, 1115, 1271
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	4 cut(s)	232, 556, 1060, 1342
MalI	GATC	2 cut(s)	920, 1539
MboI	GATC	2 cut(s)	918, 1537
MfeI	CAATTG	1 cut(s)	1568
MhlI	GDGCHC	2 cut(s)	142, 658
MlyI	GAGTC	1 cut(s)	1374
MmeI	TCCRAC	1 cut(s)	1192
Mph1103I	ATGCAT	2 cut(s)	1006, 1111
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	5 cut(s)	372, 837, 1041, 1160, 1332
MspI	CCGG	2 cut(s)	52, 239
MunI	CAATTG	1 cut(s)	1568
Mva1269I	GAATGC	1 cut(s)	1196
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	1421
NaeI	GCCGGC	1 cut(s)	53
NdeI	CATATG	1 cut(s)	1389
NdeII	GATC	2 cut(s)	918, 1537
NgoMIV	GCCGGC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	774, 1584
NmuCI	GTSAC	2 cut(s)	556, 1342
NsiI	ATGCAT	2 cut(s)	1006, 1111
NspI	RCATGY	2 cut(s)	1004, 1511
PaeI	GCATGC	1 cut(s)	1511
PagI	TCATGA	1 cut(s)	310
PctI	GAATGC	1 cut(s)	1196
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	5 cut(s)	63, 855, 950, 1364, 1559
PkrI	GCNGC	2 cut(s)	286, 1426
PleI	GAGTC	1 cut(s)	1374
PpsI	GAGTC	1 cut(s)	1374
PshBI	ATTAAT	1 cut(s)	837
PsiI	TTATAA	2 cut(s)	390, 783
PspN4I	GGNNCC	2 cut(s)	774, 1584
PspPI	GGNCC	2 cut(s)	356, 1582
RsaI	GTAC	2 cut(s)	536, 1549
RsaNI	GTAC	2 cut(s)	535, 1548
SalI	GTCGAC	1 cut(s)	1224
SaqAI	TTAA	5 cut(s)	372, 837, 1041, 1160, 1332
SatI	GCNGC	2 cut(s)	285, 1425
Sau3AI	GATC	2 cut(s)	918, 1537
Sau96I	GGNCC	2 cut(s)	356, 1582
ScaI	AGTACT	1 cut(s)	1549
SchI	GAGTC	1 cut(s)	1374
SduI	GDGCHC	2 cut(s)	142, 658
SetI	ASST	8 cut(s)	289, 444, 575, 826, 965, 1116, 1183, 1465
SfaNI	GCATC	3 cut(s)	505, 1013, 1436
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	1582
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	1511
SsiI	CCGC	2 cut(s)	359, 1629
SspI	AATATT	2 cut(s)	1555, 1624
SspMI	CTAG	4 cut(s)	422, 1020, 1115, 1271
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	1488
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	4 cut(s)	79, 1007, 1225, 1399
TatI	WGTACW	1 cut(s)	1547
TfiI	GAWTC	5 cut(s)	63, 855, 950, 1364, 1559
Tru1I	TTAA	5 cut(s)	372, 837, 1041, 1160, 1332
Tru9I	TTAA	5 cut(s)	372, 837, 1041, 1160, 1332
TseFI	GTSAC	2 cut(s)	556, 1342
TseI	GCWGC	2 cut(s)	284, 1424
Tsp45I	GTSAC	2 cut(s)	556, 1342
VneI	GTGCAC	2 cut(s)	138, 654
VpaK11BI	GGWCC	1 cut(s)	1582
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	7 cut(s)	291, 319, 680, 986, 1083, 1198, 1313
XceI	RCATGY	2 cut(s)	1004, 1511
XmiI	GTMKAC	2 cut(s)	124, 1225
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	4 cut(s)	422, 1020, 1115, 1271
ZrmI	AGTACT	1 cut(s)	1549
Zsp2I	ATGCAT	2 cut(s)	1006, 1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.