FvH4_3g27581

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004837
Physical Location & Seq
Forward (+)
20647352 .. 20648550
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27581.t1

Sequence Viewer

Length: 633 bp
ATGAATACAACAGGGCGTAGTGAAGGCACTAATTCTTTTTTCGATGACTTTGTTACATCAACTACCAATCTAAGAGAATTTGTTGTCAAGTATGAACAAGCCTTGCAAAAGATTGTTACAAGGGAAAGTAGTGAAGATTTTACATCAGAGCATAAATATCGTATTGTGAATGATGATGACTTTCTTTTGAAACATGCAGCACAGGTGTATACCAGAAATATATTTGAAAAATTCAAGAGTGAATGGACTAGAGTCAAACGGCTTAAAGTTGAAGAAAGGGGTTTTGACGATCAGTTTCATAGATACTCAGTGATGAAGAAAATCAATAACTCGCAAGAGTTTTTGGTGGAGTTAAATTTACAAACACATGAAGGTAAATGTGAATGCCAAAATTTTGAATTTGTGGGAATAATTTGCCGACATATTATGAAAGTATTTGTTCATCAAGACATTGATGCAATACCATCCCACTTTATTCTTCCAAGATGGAGACAAGGAGCAAATAAGTTTAGAGTCACGGATTCTGAAGGCTTGGTACATAATGATGGGAGTCAAAATATGCAAGAGTTGCCCGCAGTTTCGGACAAGGAAGATTCCGACGAGGAAGATTCAGACGATAACCATGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

211

Amino Acids

24.75

Weight (kDa)

5.16

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 125 - 148 5.8e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 209
AciI CCGC 1 cut(s) 573
AcsI RAATTY 5 cut(s) 77, 230, 355, 391, 398
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 537
AgsI TTSAA 5 cut(s) 190, 227, 235, 272, 398
Alw26I GTCTC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 5 cut(s) 77, 230, 355, 391, 398
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 472, 480, 539
BceAI ACGGC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmsI GCATC 1 cut(s) 445
BoxI GACNNNNGTC 1 cut(s) 251
BseGI GGATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 320
BssMI GATC 1 cut(s) 289
BssNAI GTATAC 1 cut(s) 210
Bst1107I GTATAC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 71, 307
BstF5I GGATG 1 cut(s) 464
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 573
Csp6I GTAC 1 cut(s) 536
CviAII CATG 3 cut(s) 194, 368, 623
CviJI RGCY 3 cut(s) 101, 262, 531
CviKI_1 RGCY 3 cut(s) 101, 262, 531
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 2 cut(s) 71, 307
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 546
FaeI CATG 3 cut(s) 197, 371, 626
FatI CATG 3 cut(s) 193, 367, 622
FauI CCCGC 1 cut(s) 580
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 197, 371, 626
HinfI GANTC 6 cut(s) 252, 513, 521, 550, 593, 608
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 5 cut(s) 148, 526, 583, 598, 613
Hpy188III TCNNGA 2 cut(s) 235, 446
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 3 cut(s) 17, 365, 521
HpyCH4V TGCA 4 cut(s) 106, 197, 458, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
HpyF3I CTNAG 2 cut(s) 71, 307
Hsp92II CATG 3 cut(s) 197, 371, 626
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 2 cut(s) 188, 226
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 52, 115, 514
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 146, 284, 328, 470, 602, 617
MluCI AATT 7 cut(s) 31, 77, 230, 355, 391, 398, 411
MlyI GAGTC 3 cut(s) 261, 522, 559
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 1 cut(s) 595
MseI TTAA 2 cut(s) 264, 353
MslI CAYNNNNRTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 568
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 197, 371, 626
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 197
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 3 cut(s) 521, 593, 608
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 3 cut(s) 260, 521, 558
PpsI GAGTC 3 cut(s) 260, 521, 558
PshAI GACNNNNGTC 1 cut(s) 251
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 2 cut(s) 264, 353
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 3 cut(s) 261, 522, 559
SetI ASST 2 cut(s) 207, 376
SfaNI GCATC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 7 cut(s) 31, 77, 230, 355, 391, 398, 411
SsiI CCGC 1 cut(s) 573
SspMI CTAG 1 cut(s) 249
TaqI TCGA 1 cut(s) 42
TasI AATT 7 cut(s) 31, 77, 230, 355, 391, 398, 411
TfiI GAWTC 3 cut(s) 521, 593, 608
Tru1I TTAA 2 cut(s) 264, 353
Tru9I TTAA 2 cut(s) 264, 353
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 7 cut(s) 17, 108, 287, 329, 384, 431, 443
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 315
XapI RAATTY 5 cut(s) 77, 230, 355, 391, 398
XceI RCATGY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.