FvH4_5g19941

acyl-CoA hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004837
Physical Location & Seq
Reverse (-)
11755121 .. 11755816
696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19941.t1

Sequence Viewer

Length: 696 bp
ATGAAAAAAAGGCTCGGAGAACATGAGCAAGATTTTATGGTGAAGTTAGATTTGACGACTTACGAGGGTTCTTGTGAGTGCCAAAATTTTGAGTTTGTTGGAATACTTTGTAGGCACTTGTTGAAGGTATTTTCATGTTTGGATATGGAAACAATACCGGCACATTTTATTCTTCCAAGATGGAGACAAGAGGCAAACAAATTCAGGATAATGGACTCTGAAGATTTGGTCAAAAGTGTTGGTAGAGAAGACTCAAAAGCAGCAAGACTTAACCACATGTGTCACCAAGCAACCAAATTGGCTTGTATTGCTGCAACTTCAACTGAGGGATACACACTGTTCATGGATGCTTTAAACAAAATCTCAAAAAAATTGCTGAAGCTTCTAGACCAGTCTGCAATCAATAAGGAGACTAGCGCTACTCCTCTAGACCAAGATGACCATACCATGGAAACCAGTGCTTCCCCACATATTAATGATCTATGTATTAATATTCCTTCCACCCAGTCATTACTTTTGGATCCAAATATTTCTAAGACCAAAGGCAGGAAGAAAGAAACTAAGAGTTCTGGTAGAATAAAGAGTGGTGCAGAATTGGCCATGGAGACAGGGAAAAGAAAGTGTACATTATGCTCCAAGTCAGGACACAACAAACAAACTTGTTCCTTGAATCCACAGAGAAGAAGGAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

232

Amino Acids

26.05

Weight (kDa)

8.87

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 22 - 47 1e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 448
AclWI GGATC 2 cut(s) 515, 528
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 85, 200
AcuI CTGAAG 2 cut(s) 240, 398
AfaI GTAC 1 cut(s) 625
AfeI AGCGCT 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 448, 546
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 124, 321, 670
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw26I GTCTC 3 cut(s) 178, 404, 599
AlwI GGATC 2 cut(s) 515, 528
Aor51HI AGCGCT 1 cut(s) 418
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 2 cut(s) 260, 311
ApoI RAATTY 2 cut(s) 85, 200
AseI ATTAAT 2 cut(s) 474, 489
AspLEI GCGC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 52, 275
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 272, 298
BccI CCATC 1 cut(s) 174
BciVI GTATCC 1 cut(s) 323
BcoDI GTCTC 3 cut(s) 178, 404, 599
BfaI CTAG 3 cut(s) 386, 414, 428
BfoI RGCGCY 1 cut(s) 420
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 2 cut(s) 261, 312
BlsI GCNGC 2 cut(s) 262, 313
BmiI GGNNCC 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 447, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 546
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 391, 456, 505
BseDI CCNNGG 2 cut(s) 447, 600
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 448, 546
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 391, 456, 505
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 272, 298
BsgI GTGCAG 1 cut(s) 609
BshFI GGCC 1 cut(s) 599
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 448, 546
BsmAI GTCTC 3 cut(s) 178, 404, 599
BsnI GGCC 1 cut(s) 599
Bsp1407I TGTACA 1 cut(s) 623
Bsp143I GATC 2 cut(s) 478, 520
Bsp19I CCATGG 2 cut(s) 447, 600
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 2 cut(s) 515, 528
BsrFI RCCGGY 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 623
BsrI ACTGG 3 cut(s) 391, 456, 505
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 447, 600
BssMI GATC 2 cut(s) 478, 520
BssT1I CCWWGG 2 cut(s) 447, 600
Bst4CI ACNGT 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 324, 534, 561
BstDSI CCRYGG 2 cut(s) 447, 600
BstF5I GGATG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 2 cut(s) 481, 523
BstMAI GTCTC 3 cut(s) 178, 404, 599
BstMBI GATC 2 cut(s) 478, 520
BstMWI GCNNNNNNNGC 2 cut(s) 308, 596
BstNSI RCATGY 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 272, 298
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 1 cut(s) 599
BtgI CCRYGG 2 cut(s) 447, 600
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 335, 463
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 1 cut(s) 157
Csp6I GTAC 1 cut(s) 624
CviAII CATG 6 cut(s) 23, 135, 277, 343, 448, 601
CviJI RGCY 4 cut(s) 13, 302, 382, 599
CviKI_1 RGCY 4 cut(s) 13, 302, 382, 599
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 3 cut(s) 324, 534, 561
DpnI GATC 2 cut(s) 480, 522
DpnII GATC 2 cut(s) 478, 520
DraI TTTAAA 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 447, 600
Eco47III AGCGCT 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 240, 398
EcoT14I CCWWGG 2 cut(s) 447, 600
ErhI CCWWGG 2 cut(s) 447, 600
FaeI CATG 6 cut(s) 26, 138, 280, 346, 451, 604
FatI CATG 6 cut(s) 22, 134, 276, 342, 447, 600
Fnu4HI GCNGC 2 cut(s) 261, 312
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 261, 312
FspBI CTAG 3 cut(s) 386, 414, 428
GlaI GCGC 1 cut(s) 418
GluI GCNGC 2 cut(s) 261, 312
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 1 cut(s) 599
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 419
Hin1II CATG 6 cut(s) 26, 138, 280, 346, 451, 604
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 215, 251, 670
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 52, 275
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 2 cut(s) 17, 220
Hpy188III TCNNGA 4 cut(s) 205, 386, 428, 642
Hpy8I GTNNAC 1 cut(s) 624
HpyAV CCTTC 3 cut(s) 118, 507, 678
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 314, 398, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 596
HpyF3I CTNAG 3 cut(s) 324, 534, 561
Hsp92II CATG 6 cut(s) 26, 138, 280, 346, 451, 604
HspAI GCGC 1 cut(s) 417
Kzo9I GATC 2 cut(s) 478, 520
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 9 cut(s) 171, 190, 404, 469, 518, 532, 555, 594, 627
Lsp1109I GCAGC 2 cut(s) 272, 298
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 386, 414, 428
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 480, 522
MboI GATC 2 cut(s) 478, 520
MboII GAAGA 5 cut(s) 164, 233, 260, 562, 693
MflI RGATCY 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 5 cut(s) 85, 200, 296, 371, 593
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 2 cut(s) 209, 245
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 58, 184, 319, 435
Mox20I TGGCCA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 599
MseI TTAA 4 cut(s) 270, 353, 474, 489
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 599
MspI CCGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 308, 596
NcoI CCATGG 2 cut(s) 447, 600
NdeII GATC 2 cut(s) 478, 520
NlaIII CATG 6 cut(s) 26, 138, 280, 346, 451, 604
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 1 cut(s) 670
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 2 cut(s) 262, 313
PleI GAGTC 2 cut(s) 209, 245
PpsI GAGTC 2 cut(s) 209, 245
PscI ACATGT 1 cut(s) 276
PshBI ATTAAT 2 cut(s) 474, 489
PspN4I GGNNCC 1 cut(s) 522
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 4 cut(s) 270, 353, 474, 489
SatI GCNGC 2 cut(s) 261, 312
Sau3AI GATC 2 cut(s) 478, 520
SchI GAGTC 2 cut(s) 209, 245
SetI ASST 2 cut(s) 129, 384
SfaNI GCATC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 5 cut(s) 85, 200, 296, 371, 593
SspI AATATT 2 cut(s) 493, 529
SspMI CTAG 3 cut(s) 386, 414, 428
StyI CCWWGG 2 cut(s) 447, 600
TaaI ACNGT 1 cut(s) 339
TasI AATT 5 cut(s) 85, 200, 296, 371, 593
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 4 cut(s) 270, 353, 474, 489
Tru9I TTAA 4 cut(s) 270, 353, 474, 489
TscAI CASTG 2 cut(s) 342, 463
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 260, 311
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 17, 123, 331
TspRI CASTG 2 cut(s) 342, 463
Van91I CCANNNNNTGG 1 cut(s) 448
VspI ATTAAT 2 cut(s) 474, 489
XapI RAATTY 2 cut(s) 85, 200
XbaI TCTAGA 2 cut(s) 385, 427
XceI RCATGY 1 cut(s) 280
XspI CTAG 3 cut(s) 386, 414, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.