Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000904.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

22484 .. 23584

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000904.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgaagatgaagtcaaataaacatatgcctaaagcagcgaggaatatgactgaaatattccataaagaaaatttgccgattgcaaaagttcattcaatccttggtggtgatcaaattggttttaacaaaaaagattgttataaccacttaagaaatgttcgtcatagacaattggatggaggagatgctcagtcagtcctcacttacttcaggaaaaagcaagctaagaatccccaatttttttatgcaatccaatgcgacgaagatggaagagcaactaatttcttttgggtcaactctcgatcacggacagcttatgaatattttgtagatgtggtcacattcgacacaacttataggacaaacaagtatgatatgccgtttgcgccattcacaggagtaaaccaccactggcaatcaatacaattcggctgtgcacttctacaagatgagacggaggctacctttttttcgttatttgagacatggctagaagcaatgggaggtcgtcatccaattttcattattactgaccaagacttggcaatgaaaggagcaattgccaagatatttccaaatactcaccctcgtttatgcctttggcatatcaagaagaagtttattgagacactgtcccatgtgtactataagaaatcgaaattcaagaaggagatgaagaaatgtattcaattaacatacaagactgaagattttgaagaaaaatggaagactttgatgacagaaaatggattggaagaaaatgaatggttaaataatctttatgagatatgtacttcttgtgtaccgatttatcatagtggaacattttttgcaggaatgaatactactggacgtagtgagggaattaattcatttttcgatggatttgttacttcaacaacaaatcttggagaatttgttgttaaatatgatcaagcactaaagagcattatagataatgaaagttatgaagactatgaaacagaacacaagtttcgtatcgtgaatgatgatgaattccttttgaaagatgcagcaaagttgtataccagaaatgttttcaacaaattcaaggtacaatggagtcaaattaagcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

366

Amino Acids

43.05

Weight (kDa)

8.47

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	1046
AcsI	RAATTY	5 cut(s)	70, 659, 914, 1016, 1067
AcuI	CTGAAG	2 cut(s)	193, 726
AfaI	GTAC	4 cut(s)	644, 793, 804, 1077
AfiI	CCNNNNNNNGG	2 cut(s)	395, 541
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	8 cut(s)	96, 664, 689, 716, 897, 1027, 1063, 1072
AluBI	AGCT	2 cut(s)	224, 314
AluI	AGCT	2 cut(s)	224, 314
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	446, 476, 620
Alw44I	GTGCAC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	35, 1034
ApoI	RAATTY	5 cut(s)	70, 659, 914, 1016, 1067
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	119, 575
BaeGI	GKGCMC	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	734, 978
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	47, 1046
BccI	CCATC	3 cut(s)	170, 260, 875
BceAI	ACGGC	1 cut(s)	364
BclI	TGATCA	2 cut(s)	109, 931
BcoDI	GTCTC	3 cut(s)	446, 476, 620
BfaI	CTAG	1 cut(s)	491
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	2 cut(s)	36, 1035
BlsI	GCNGC	2 cut(s)	37, 1036
BmsI	GCATC	2 cut(s)	175, 1021
BpiI	GAAGAC	2 cut(s)	734, 978
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 541
Bse1I	ACTGG	2 cut(s)	416, 853
Bse3DI	GCAATG	2 cut(s)	504, 552
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	181, 511
BseLI	CCNNNNNNNGG	2 cut(s)	395, 541
BseMI	GCAATG	2 cut(s)	504, 552
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	416, 853
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	47, 1046
BsiHKAI	GWGCWC	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	2 cut(s)	395, 541
BsmAI	GTCTC	3 cut(s)	446, 476, 620
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	109, 302, 931
BspCNI	CTCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	148
BsrDI	GCAATG	2 cut(s)	504, 552
BsrI	ACTGG	2 cut(s)	416, 853
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	109, 302, 931
BssNAI	GTATAC	1 cut(s)	1047
BssT1I	CCWWGG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	1047
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	189, 225
BstF5I	GGATG	2 cut(s)	181, 511
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	112, 305, 934
BstMAI	GTCTC	3 cut(s)	446, 476, 620
BstMBI	GATC	3 cut(s)	109, 302, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	47, 1046
BstV2I	GAAGAC	2 cut(s)	734, 978
BstZ17I	GTATAC	1 cut(s)	1047
BtsCI	GGATG	2 cut(s)	181, 511
BtsIMutI	CAGTG	2 cut(s)	409, 629
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	388
Csp6I	GTAC	4 cut(s)	643, 792, 803, 1076
CviAII	CATG	2 cut(s)	486, 638
CviJI	RGCY	5 cut(s)	224, 314, 432, 461, 490
CviKI_1	RGCY	5 cut(s)	224, 314, 432, 461, 490
CviQI	GTAC	4 cut(s)	643, 792, 803, 1076
DdeI	CTNAG	2 cut(s)	189, 225
DpnI	GATC	3 cut(s)	111, 304, 933
DpnII	GATC	3 cut(s)	109, 302, 931
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	193, 726
EcoRI	GAATTC	1 cut(s)	1016
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	2 cut(s)	489, 641
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	2 cut(s)	485, 637
FauNDI	CATATG	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	109, 931
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	2 cut(s)	36, 1035
FokI	GGATG	2 cut(s)	188, 498
Fsp4HI	GCNGC	2 cut(s)	36, 1035
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	36, 1035
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	489, 641
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	229, 1084
HphI	GGTGA	2 cut(s)	119, 575
Hpy166II	GTNNAC	6 cut(s)	295, 403, 437, 643, 803, 1047
Hpy188III	TCNNGA	5 cut(s)	211, 300, 610, 664, 1003
Hpy8I	GTNNAC	6 cut(s)	295, 403, 437, 643, 803, 1047
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	5 cut(s)	83, 248, 437, 833, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	2 cut(s)	189, 225
HpySE526I	ACGT	1 cut(s)	853
Hsp92II	CATG	2 cut(s)	489, 641
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	2 cut(s)	109, 931
Kzo9I	GATC	3 cut(s)	109, 302, 931
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	6 cut(s)	196, 381, 397, 819, 834, 1063
Lsp1109I	GCAGC	2 cut(s)	47, 1046
LweI	GCATC	2 cut(s)	175, 1021
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	2 cut(s)	337, 889
MalI	GATC	3 cut(s)	111, 304, 933
MboI	GATC	3 cut(s)	109, 302, 931
MfeI	CAATTG	2 cut(s)	170, 558
MhlI	GDGCHC	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	1093
MnlI	CCTC	7 cut(s)	33, 173, 209, 451, 497, 597, 853
MroXI	GAANNNNTTC	1 cut(s)	868
MseI	TTAA	7 cut(s)	123, 149, 692, 770, 867, 924, 1092
MspCI	CTTAAG	1 cut(s)	148
MunI	CAATTG	2 cut(s)	170, 558
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	3 cut(s)	109, 302, 931
NlaIII	CATG	2 cut(s)	489, 641
NmuCI	GTSAC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	37, 1036
PleI	GAGTC	1 cut(s)	1092
PpsI	GAGTC	1 cut(s)	1092
PshBI	ATTAAT	1 cut(s)	867
PsiI	TTATAA	1 cut(s)	141
PsyI	GACNNNGTC	1 cut(s)	631
RsaI	GTAC	4 cut(s)	644, 793, 804, 1077
RsaNI	GTAC	4 cut(s)	643, 792, 803, 1076
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	7 cut(s)	123, 149, 692, 770, 867, 924, 1092
SatI	GCNGC	2 cut(s)	36, 1035
Sau3AI	GATC	3 cut(s)	109, 302, 931
SchI	GAGTC	1 cut(s)	1093
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	6 cut(s)	226, 316, 467, 508, 856, 1077
SfaNI	GCATC	2 cut(s)	175, 1021
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SspI	AATATT	2 cut(s)	57, 323
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	633
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	4 cut(s)	301, 345, 656, 879
TatI	WGTACW	2 cut(s)	642, 791
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	7 cut(s)	123, 149, 692, 770, 867, 924, 1092
Tru9I	TTAA	7 cut(s)	123, 149, 692, 770, 867, 924, 1092
TscAI	CASTG	2 cut(s)	416, 636
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	35, 1034
Tsp45I	GTSAC	1 cut(s)	337
TspGWI	ACGGA	2 cut(s)	322, 470
TspRI	CASTG	2 cut(s)	416, 636
Tth111I	GACNNNGTC	1 cut(s)	631
Van91I	CCANNNNNTGG	1 cut(s)	541
Vha464I	CTTAAG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	435
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	5 cut(s)	70, 659, 914, 1016, 1067
XmiI	GTMKAC	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.