Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

6845523 .. 6847347

Gene Structure 1825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07931.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGCTTTTTGAAACAGTAGATGAAGCCAGAAAATATTACGAAGAATACGGTCGGGAAGAAGGCTTTTGGATTCGAACACAATCTTCTAAAAGGACAAGATCCCGCTCAGACGAGGTGACTAGTTGCCAATTCGTTTGTGCTCATCAGGGAAAATATGTCTGGAAGAAAACCGTAAAAGAGGGGTGGAAACAAAACAATCAGACAGAGACTAGTGAAAATGATACTGAGACCGGAAACGAGGATGCTAATGGGACTGAGCGTGCTGAGAAAGGTAGCGATATGAATAAAAAGAAAGTGAGTAGAAATTGTTCTATTGTGAAATGTGGGTGCAAAGCTAGTATGCGGATCATTCATGACAAGTGGTTAAACAAATGGAAGGTATCTGTTTTTAGAGACTTTCACAATCACAAAGTAGTTACTCCAGTAAGAAGAAAGAAGATGAAGTCAAATAAACATATGCCTAAAGCAGCAAGGAGTATGACAGAGATATTTCATAAAGAAAATTTGCCGATTGCAAAAGTTCATTCAATCCTTGGTGGTGCTCAAATTGGTTTTAACAAAAGAGATTGCTATAATCATTTAAGAAATGTTCGTCATAGACAGCTGGATGGAGGAGATGCTCAGTCAGTGCTCACTTACTTTAGAAAAAAACAAGCTGAAAATCCCCAATTTTTTTATGCAATCCAATGCGATGAAGATGGAAGAGCAACTAATTTCTTTTGGGTTGACGCTCGATCACACATGGCCTATGAATATTTTGGAGACGTGGTCACATTCGACACAACGTACAGGACAAACAAGTATGATATGCCTTTTGCGCCATTCACAGGAGTGAACCACCATTGGCAGTCGATACAGTTTGGTTGTGCACTTCTACAAGATGAGACAGAGACAACTTTTTTGTGGTTATTTGAGACATGGTTACAAGCAATGGGAGGTCGTCATCCAATTTCCATTATAACTGACCAAGATTTGGCAATGAAAGGAGCAATTGCCAAGATATTTCCAAACACTCACCATCGCTTATGCCTTTGGCATATCAAGAAGAAGTTTGTTGAGAAGTTGTCCCATGTGTACTACAAGAAATCAAAATTCAAAAAGGAGATGAAGAAATGTATTCAATTTACATACAGGACTGAAGACTTTGAAGATAAATGGAAGACTTTAATGACTGAATATGAATTAGAAGAAAATGATTGGTTAAATAATCTTTATGAGATACGTACTTCTTGGGTGCCGGTTTATCATCATGGAACCTTCTTTGCAGGAATGAATACTACTGGACGCAGTGAGGGAATTAACTCTTTTTTTGATGGGTTTGTTACATCAACGACAAATCTTAGAGAGTTTGTGGCACTTGTTGAAGGTATTTTCACGTTTGGATATGGAAACAATACCGGCACATTTTATTCTTCCAAGATGGAGACAAGAGGCAAACAAATTCAGGATAATGGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

487

Amino Acids

57.06

Weight (kDa)

9.11

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	11 - 139	5.8e-09	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	221 - 338	2.3e-08	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	256 - 350	9.7e-33	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	1234
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	2 cut(s)	103, 343
AclWI	GGATC	2 cut(s)	93, 353
AcsI	RAATTY	3 cut(s)	502, 1091, 1440
AcuI	CTGAAG	1 cut(s)	1158
AfaI	GTAC	3 cut(s)	788, 1076, 1225
AfiI	CCNNNNNNNGG	2 cut(s)	827, 973
AgsI	TTSAA	6 cut(s)	11, 528, 1096, 1121, 1148, 1364
AhlI	ACTAGT	2 cut(s)	119, 209
AjiI	CACGTC	1 cut(s)	766
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	3 cut(s)	335, 604, 656
AluI	AGCT	3 cut(s)	335, 604, 656
Alw21I	GWGCWC	4 cut(s)	142, 544, 633, 871
Alw26I	GTCTC	8 cut(s)	200, 221, 387, 756, 878, 884, 908, 1418
Alw44I	GTGCAC	1 cut(s)	867
AlwI	GGATC	2 cut(s)	93, 353
AoxI	GGCC	1 cut(s)	744
ApaLI	GTGCAC	1 cut(s)	867
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	3 cut(s)	502, 1091, 1440
ArsI	GACNNNNNNTTYG	2 cut(s)	883, 915
Asp700I	GAANNNNTTC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	127, 1007
AsuII	TTCGAA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	871
BanI	GGYRCC	1 cut(s)	1234
BbsI	GAAGAC	2 cut(s)	1146, 1166
Bbv12I	GWGCWC	4 cut(s)	142, 544, 633, 871
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	5 cut(s)	602, 692, 1026, 1307, 1414
BcoDI	GTCTC	8 cut(s)	200, 221, 387, 756, 878, 884, 908, 1418
BcuI	ACTAGT	2 cut(s)	119, 209
BfaI	CTAG	3 cut(s)	120, 210, 336
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmgBI	CACGTC	1 cut(s)	766
BmiI	GGNNCC	2 cut(s)	1236, 1255
BmsI	GCATC	2 cut(s)	232, 607
BpiI	GAAGAC	2 cut(s)	1146, 1166
BpmI	CTGGAG	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	1223
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 973
Bse118I	RCCGGY	2 cut(s)	1237, 1397
Bse1I	ACTGG	2 cut(s)	422, 1285
Bse3DI	GCAATG	2 cut(s)	936, 984
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	3 cut(s)	247, 613, 943
BseLI	CCNNNNNNNGG	2 cut(s)	827, 973
BseMI	GCAATG	2 cut(s)	936, 984
BseMII	CTCAG	5 cut(s)	120, 216, 246, 255, 635
BseNI	ACTGG	2 cut(s)	422, 1285
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	871
BseXI	GCAGC	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	1234
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	4 cut(s)	142, 544, 633, 871
BsiSI	CCGG	3 cut(s)	231, 1238, 1398
BslFI	GGGAC	2 cut(s)	265, 1051
BslI	CCNNNNNNNGG	2 cut(s)	827, 973
BsmAI	GTCTC	8 cut(s)	200, 221, 387, 756, 878, 884, 908, 1418
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	2 cut(s)	265, 1051
BsnI	GGCC	1 cut(s)	746
Bso31I	GGTCTC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	4 cut(s)	142, 544, 633, 871
Bsp143I	GATC	3 cut(s)	98, 345, 734
BspACI	CCGC	2 cut(s)	103, 343
BspANI	GGCC	1 cut(s)	746
BspCNI	CTCAG	5 cut(s)	119, 217, 247, 256, 634
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	1236, 1255
BspPI	GGATC	2 cut(s)	93, 353
BspQI	GCTCTTC	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	1234
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	936, 984
BsrFI	RCCGGY	2 cut(s)	1237, 1397
BsrI	ACTGG	2 cut(s)	422, 1285
BssAI	RCCGGY	2 cut(s)	1237, 1397
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	3 cut(s)	98, 345, 734
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	4 cut(s)	16, 50, 172, 858
Bst6I	CTCTTC	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	1223
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	6 cut(s)	106, 225, 255, 264, 621, 1340
BstF5I	GGATG	3 cut(s)	247, 613, 943
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	3 cut(s)	101, 348, 737
BstMAI	GTCTC	8 cut(s)	200, 221, 387, 756, 878, 884, 908, 1418
BstMBI	GATC	3 cut(s)	98, 345, 734
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	817
BstSLI	GKGCMC	1 cut(s)	871
BstSNI	TACGTA	1 cut(s)	1223
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	2 cut(s)	1146, 1166
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	746
BtgZI	GCGATG	2 cut(s)	705, 1004
BtrI	CACGTC	1 cut(s)	766
BtsCI	GGATG	3 cut(s)	247, 613, 943
BtsI	GCAGTG	1 cut(s)	1294
BtsIMutI	CAGTG	2 cut(s)	633, 1294
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	820
Cfr10I	RCCGGY	2 cut(s)	1237, 1397
CseI	GACGC	2 cut(s)	737, 1293
Csp6I	GTAC	3 cut(s)	787, 1075, 1224
CviAII	CATG	5 cut(s)	353, 742, 918, 1070, 1250
CviJI	RGCY	6 cut(s)	26, 63, 335, 604, 656, 746
CviKI_1	RGCY	6 cut(s)	26, 63, 335, 604, 656, 746
CviQI	GTAC	3 cut(s)	787, 1075, 1224
DdeI	CTNAG	6 cut(s)	106, 225, 255, 264, 621, 1340
DpnI	GATC	3 cut(s)	100, 347, 736
DpnII	GATC	3 cut(s)	98, 345, 734
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
Eco105I	TACGTA	1 cut(s)	1223
Eco130I	CCWWGG	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	1158
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	5 cut(s)	356, 745, 921, 1073, 1253
FaqI	GGGAC	2 cut(s)	265, 1051
FatI	CATG	5 cut(s)	352, 741, 917, 1069, 1249
FauI	CCCGC	1 cut(s)	110
FauNDI	CATATG	1 cut(s)	456
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	254, 620, 930
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	3 cut(s)	120, 210, 336
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	746
HapII	CCGG	3 cut(s)	231, 1238, 1398
HgaI	GACGC	2 cut(s)	737, 1293
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	5 cut(s)	356, 745, 921, 1073, 1253
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	2 cut(s)	70, 1455
HpaII	CCGG	3 cut(s)	231, 1238, 1398
HphI	GGTGA	2 cut(s)	127, 1007
Hpy166II	GTNNAC	4 cut(s)	727, 835, 869, 1075
Hpy188I	TCNGA	3 cut(s)	109, 201, 1460
Hpy188III	TCNNGA	5 cut(s)	53, 160, 353, 1042, 1445
Hpy8I	GTNNAC	4 cut(s)	727, 835, 869, 1075
HpyAV	CCTTC	4 cut(s)	53, 370, 1267, 1358
HpyCH4III	ACNGT	4 cut(s)	16, 50, 172, 858
HpyCH4IV	ACGT	4 cut(s)	765, 785, 1222, 1376
HpyCH4V	TGCA	5 cut(s)	330, 515, 680, 869, 1265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	817
HpyF3I	CTNAG	6 cut(s)	106, 225, 255, 264, 621, 1340
HpySE526I	ACGT	4 cut(s)	765, 785, 1222, 1376
Hsp92II	CATG	5 cut(s)	356, 745, 921, 1073, 1253
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	3 cut(s)	98, 345, 734
LguI	GCTCTTC	1 cut(s)	697
LmnI	GCTCC	1 cut(s)	986
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	2 cut(s)	232, 607
MaeI	CTAG	3 cut(s)	120, 210, 336
MaeII	ACGT	4 cut(s)	765, 785, 1222, 1376
MaeIII	GTNAC	5 cut(s)	115, 415, 769, 921, 1321
MalI	GATC	3 cut(s)	100, 347, 736
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	3 cut(s)	98, 345, 734
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	4 cut(s)	142, 544, 633, 871
MlyI	GAGTC	1 cut(s)	1449
MnlI	CCTC	7 cut(s)	106, 172, 232, 605, 929, 1285, 1424
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	6 cut(s)	365, 555, 581, 1166, 1202, 1299
MslI	CAYNNNNRTG	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	3 cut(s)	231, 1238, 1398
MunI	CAATTG	1 cut(s)	990
MwoI	GCNNNNNNNGC	1 cut(s)	817
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	3 cut(s)	98, 345, 734
NlaIII	CATG	5 cut(s)	356, 745, 921, 1073, 1253
NlaIV	GGNNCC	2 cut(s)	1236, 1255
NmuCI	GTSAC	2 cut(s)	115, 769
NspV	TTCGAA	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	830
PagI	TCATGA	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	767
PflMI	CCANNNNNTGG	1 cut(s)	973
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	1449
PpsI	GAGTC	1 cut(s)	1449
Ppu21I	YACGTR	1 cut(s)	1223
PsiI	TTATAA	1 cut(s)	959
PspN4I	GGNNCC	2 cut(s)	1236, 1255
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	3 cut(s)	788, 1076, 1225
RsaNI	GTAC	3 cut(s)	787, 1075, 1224
RseI	CAYNNNNRTG	1 cut(s)	830
SapI	GCTCTTC	1 cut(s)	697
SaqAI	TTAA	6 cut(s)	365, 555, 581, 1166, 1202, 1299
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	98, 345, 734
SchI	GAGTC	1 cut(s)	1449
SduI	GDGCHC	4 cut(s)	142, 544, 633, 871
SfaNI	GCATC	2 cut(s)	232, 607
SfuI	TTCGAA	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	830
SnaBI	TACGTA	1 cut(s)	1223
SpeI	ACTAGT	2 cut(s)	119, 209
SsiI	CCGC	2 cut(s)	103, 343
SspI	AATATT	2 cut(s)	35, 755
SspMI	CTAG	3 cut(s)	120, 210, 336
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	4 cut(s)	16, 50, 172, 858
TaiI	ACGT	4 cut(s)	768, 788, 1225, 1379
TaqI	TCGA	4 cut(s)	73, 733, 777, 851
TatI	WGTACW	1 cut(s)	1074
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	6 cut(s)	365, 555, 581, 1166, 1202, 1299
Tru9I	TTAA	6 cut(s)	365, 555, 581, 1166, 1202, 1299
TscAI	CASTG	2 cut(s)	633, 1294
TseFI	GTSAC	2 cut(s)	115, 769
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	115, 769
TspRI	CASTG	2 cut(s)	633, 1294
Tth111I	GACNNNGTC	1 cut(s)	767
Van91I	CCANNNNNTGG	1 cut(s)	973
VneI	GTGCAC	1 cut(s)	867
XapI	RAATTY	3 cut(s)	502, 1091, 1440
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	3 cut(s)	120, 210, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.