Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

4075836 .. 4077698

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

GAGATAATTCAAGTGAAGAATGGTGAAACAAGTACTCCAAAAAAGAAAGTGACACAATTAAAAGCGCCTTATTCAGGGATGGTATTTGACACAATGGAAGAAGCAAGAAACTATTATGAAGAGTATGGCCGACAAGAGGGATTCTGGATTAGAACTCGATCTTCCTCCAAGACAAGAAGGCGTTTAGATGAGGTAACGAGTAGACAATTTGTTTGTGCACATGAAGGAAAATACGTGCCCAAAAATACATCACAGAAGGCTTCAGAAGAGAATGATGAGAAAAACATAATGAAATGTGGATGCAAAGCAAGTATGAGAATTAAGCTTGATAGATGGTCAAACAAATGGAAAGTTTCAAGTTTCCAAGACTCTCACAATCACAAGCCAGTTACACCGGAAAGAAGAATGAAAATGAAGTCAAATAGGGTTATGCCGAAAGCAGCTAAAATTCTGACTGAAACATTTCATGAAGAAAATTTGCCAATTGCAAAAGTTCCTTCAATCTTTGGTGGCCCGCATATTGGTTTTAACAATAGAGATTGTTATAACCACTTGAGAAATGTCCGGCATAGACAACTGGATGGAGGTGATGCACAGTCAGTCCTTACTTACTTTAGGAAGAAGCAAGCTGAGAATCCTCAATTTTTTTATGCCATTCAATGTGATGAAAACGGAAGGGCAGCTAATTTCTTTTGGGTGGATGCTCGATCACGCATGGCGTACAACTATTTTGGAGATGTAGTCACATTTGACACAACCTATAGGACAAACAAGTATGATATGCCATTTGCACAATTCACAGGAGTAAACCACCATTTGCAATCAATACAATTTGGATGTGCACTTTTACAAGATGAGACAGAGGTGACATTTTTGTGGTTGTTTGAGACATGGCTTGAAGCAATGGGAGGACGTCATCCAGTTTCCATTATTACTGATCAAGACTTAGCAATGAAAGGAGCAATTGCCAAGATTTTTCCTAACACTCGCCATCGGTTATGCCTCTGGCATATTAAAAAGAAGTTTGCAGAAAAATTGTCACATGTGTACTTCAAGAAGTCCAAATTCAAAATTCAGATGAAGAAATGTATTCGGTCAACATACAAGATAGAGGAATTTGAAGAAAAGTGGAAGGAATTGATGAAAGAATGTGAATTGGCTAATGATGACTGGTTGAATAGTTTATATGATATACGTTCTTCTTGGGTTCCTGTTTATAATCGTGGCATATTTTTTGCAGGAATGAACACTACTGGACGTAGTGAGGGTATTAATTCTTTTTTTGATGGATTCGTCACACCGACAACAAATCTTAGAGAGTTTGTTGTCAAATATGAGCAAGCACTAAAGAGGATCATGGATAGAGAAAGTGATGAAGATTTTGAATCAGAACACAAGTATCGCATTGTGAATGAAGGAGAATTCCTTTTGAAACATGCAGCAAAGTTTTACACTAGAAATGTTTTCAACAAGTTTAAGGATGAATGGAGTAAAGTTACTCTCTACAAAGTTGAAGAAATTCCATGTGACGACGAATATCATGCATATCTAGTGAAAACAAAACTTGGAGAGCATGAAGAGTTTGTGGTGAAGTTAAATTTGCAAACATACAAAGGTATGTGTGAATGCCAAAATTTTGAGTTTGTTGGAATACTTTGTCGACATTTGTTGAAAGTATTTGTTCGCCTTGATATAGATACACTACCTGACCATTTTATTCTTCCAAGATGGAGACAAGAAGCAAACAAATTTAGGATAATGGATTTTAAAAGTTTGGTGACAAATGATGGTAAAGAAGAATCAGACACTACTACAAAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

606

Amino Acids

71.6

Weight (kDa)

8.96

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	546, 1218
AatII	GACGTC	1 cut(s)	916
AccI	GTMKAC	2 cut(s)	202, 1660
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	1361
AcoI	YGGCCR	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	913
AfaI	GTAC	3 cut(s)	34, 722, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	74, 136, 521
AflIII	ACRYGT	1 cut(s)	1042
AluBI	AGCT	4 cut(s)	325, 443, 629, 683
AluI	AGCT	4 cut(s)	325, 443, 629, 683
Alw21I	GWGCWC	2 cut(s)	220, 844
Alw26I	GTCTC	3 cut(s)	851, 881, 1726
Alw44I	GTGCAC	2 cut(s)	216, 840
AlwI	GGATC	1 cut(s)	1361
AoxI	GGCC	2 cut(s)	127, 511
ApaLI	GTGCAC	2 cut(s)	216, 840
ApeKI	GCWGC	3 cut(s)	440, 680, 1439
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AseI	ATTAAT	1 cut(s)	1272
Asp700I	GAANNNNTTC	2 cut(s)	462, 1518
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	5 cut(s)	35, 599, 877, 1600, 1789
BaeGI	GKGCMC	3 cut(s)	220, 240, 844
BaeI	ACNNNNGTAYC	2 cut(s)	1382, 1415
Bbv12I	GWGCWC	2 cut(s)	220, 844
BbvI	GCAGC	3 cut(s)	452, 692, 1451
BccI	CCATC	7 cut(s)	73, 327, 575, 999, 1280, 1722, 1781
BcgI	CGANNNNNNTGC	2 cut(s)	1523, 1557
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	3 cut(s)	851, 881, 1726
BfaI	CTAG	2 cut(s)	1455, 1550
BfmI	CTRYAG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	3 cut(s)	441, 681, 1440
BlsI	GCNGC	3 cut(s)	442, 682, 1441
BmcAI	AGTACT	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	1209
BmsI	GCATC	3 cut(s)	290, 580, 691
BpuEI	CTTGAG	1 cut(s)	574
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	913
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 136, 521
Bse1I	ACTGG	5 cut(s)	386, 582, 920, 1175, 1258
Bse3DI	GCAATG	2 cut(s)	909, 957
BseGI	GGATG	7 cut(s)	84, 305, 586, 706, 842, 916, 1486
BseLI	CCNNNNNNNGG	3 cut(s)	74, 136, 521
BseMI	GCAATG	2 cut(s)	909, 957
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	5 cut(s)	386, 582, 920, 1175, 1258
BseSI	GKGCMC	3 cut(s)	220, 240, 844
BseXI	GCAGC	3 cut(s)	452, 692, 1451
BshFI	GGCC	2 cut(s)	129, 513
BsiHKAI	GWGCWC	2 cut(s)	220, 844
BsiSI	CCGG	2 cut(s)	395, 565
BslI	CCNNNNNNNGG	3 cut(s)	74, 136, 521
BsmAI	GTCTC	3 cut(s)	851, 881, 1726
BsmI	GAATGC	1 cut(s)	1631
BsnI	GGCC	2 cut(s)	129, 513
Bsp1286I	GDGCHC	3 cut(s)	220, 240, 844
Bsp143I	GATC	4 cut(s)	158, 707, 937, 1353
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	129, 513
BspCNI	CTCAG	1 cut(s)	622
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	1209
BspPI	GGATC	1 cut(s)	1361
BsrDI	GCAATG	2 cut(s)	909, 957
BsrI	ACTGG	5 cut(s)	386, 582, 920, 1175, 1258
BssMI	GATC	4 cut(s)	158, 707, 937, 1353
BssNI	GRCGYC	1 cut(s)	913
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	3 cut(s)	114, 261, 1572
BstACI	GRCGYC	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	515, 627, 1341
BstDEI	CTNAG	3 cut(s)	630, 946, 1313
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	7 cut(s)	84, 305, 586, 706, 842, 916, 1486
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	161, 710, 940, 1356
BstMAI	GTCTC	3 cut(s)	851, 881, 1726
BstMBI	GATC	4 cut(s)	158, 707, 937, 1353
BstNSI	RCATGY	2 cut(s)	1046, 1439
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	3 cut(s)	220, 240, 844
BstV1I	GCAGC	3 cut(s)	452, 692, 1451
BsuRI	GGCC	2 cut(s)	129, 513
BtsCI	GGATG	7 cut(s)	84, 305, 586, 706, 842, 916, 1486
Cac8I	GCNNGC	3 cut(s)	515, 627, 1341
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	33, 721, 1048
CviQI	GTAC	3 cut(s)	33, 721, 1048
DdeI	CTNAG	3 cut(s)	630, 946, 1313
DpnI	GATC	4 cut(s)	160, 709, 939, 1355
DpnII	GATC	4 cut(s)	158, 707, 937, 1353
DraI	TTTAAA	1 cut(s)	1768
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	114, 261, 1572
EarI	CTCTTC	3 cut(s)	114, 261, 1572
Eco57I	CTGAAG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	1421
EcoT22I	ATGCAT	1 cut(s)	1546
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	2 cut(s)	202, 1660
Fnu4HI	GCNGC	3 cut(s)	441, 681, 1440
FokI	GGATG	7 cut(s)	91, 312, 593, 713, 849, 903, 1493
Fsp4HI	GCNGC	3 cut(s)	441, 681, 1440
FspBI	CTAG	2 cut(s)	1455, 1550
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	441, 681, 1440
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	129, 513
HapII	CCGG	2 cut(s)	395, 565
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	913
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	2 cut(s)	1098, 1661
HindII	GTYRAC	2 cut(s)	1098, 1661
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	6 cut(s)	141, 368, 634, 1290, 1385, 1799
HpaII	CCGG	2 cut(s)	395, 565
HphI	GGTGA	5 cut(s)	35, 599, 877, 1600, 1789
Hpy166II	GTNNAC	7 cut(s)	203, 218, 808, 842, 1048, 1098, 1661
Hpy188I	TCNGA	5 cut(s)	265, 453, 1077, 1390, 1804
Hpy188III	TCNNGA	4 cut(s)	145, 467, 941, 1054
Hpy8I	GTNNAC	7 cut(s)	203, 218, 808, 842, 1048, 1098, 1661
Hpy99I	CGWCG	1 cut(s)	1535
HpyAV	CCTTC	7 cut(s)	171, 218, 250, 507, 669, 1126, 1409
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	4 cut(s)	234, 913, 1195, 1258
HpyF3I	CTNAG	3 cut(s)	630, 946, 1313
HpySE526I	ACGT	4 cut(s)	234, 913, 1195, 1258
Hsp92I	GRCGYC	1 cut(s)	913
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	158, 707, 937, 1353
LmnI	GCTCC	1 cut(s)	959
Lsp1109I	GCAGC	3 cut(s)	452, 692, 1451
LweI	GCATC	3 cut(s)	290, 580, 691
MaeI	CTAG	2 cut(s)	1455, 1550
MaeII	ACGT	4 cut(s)	234, 913, 1195, 1258
MalI	GATC	4 cut(s)	160, 709, 939, 1355
MboI	GATC	4 cut(s)	158, 707, 937, 1353
MfeI	CAATTG	2 cut(s)	483, 963
MhlI	GDGCHC	3 cut(s)	220, 240, 844
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	1627
Mph1103I	ATGCAT	1 cut(s)	1546
MroXI	GAANNNNTTC	2 cut(s)	462, 1518
MseI	TTAA	8 cut(s)	59, 321, 528, 1014, 1272, 1476, 1595, 1767
MslI	CAYNNNNRTG	1 cut(s)	874
MspI	CCGG	2 cut(s)	395, 565
MunI	CAATTG	2 cut(s)	483, 963
Mva1269I	GAATGC	1 cut(s)	1631
NdeII	GATC	4 cut(s)	158, 707, 937, 1353
NlaIV	GGNNCC	1 cut(s)	1209
NmuCI	GTSAC	7 cut(s)	49, 742, 865, 1038, 1294, 1526, 1777
NsiI	ATGCAT	1 cut(s)	1546
NspI	RCATGY	2 cut(s)	1046, 1439
PagI	TCATGA	1 cut(s)	466
PciI	ACATGT	1 cut(s)	1042
PctI	GAATGC	1 cut(s)	1631
PdmI	GAANNNNTTC	2 cut(s)	462, 1518
PfeI	GAWTC	5 cut(s)	141, 634, 1290, 1385, 1799
PkrI	GCNGC	3 cut(s)	442, 682, 1441
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	235
PscI	ACATGT	1 cut(s)	1042
PshBI	ATTAAT	1 cut(s)	1272
PsiI	TTATAA	2 cut(s)	546, 1218
PspN4I	GGNNCC	1 cut(s)	1209
PspPI	GGNCC	1 cut(s)	512
RsaI	GTAC	3 cut(s)	34, 722, 1049
RsaNI	GTAC	3 cut(s)	33, 721, 1048
RseI	CAYNNNNRTG	1 cut(s)	874
SalI	GTCGAC	1 cut(s)	1659
SaqAI	TTAA	8 cut(s)	59, 321, 528, 1014, 1272, 1476, 1595, 1767
SatI	GCNGC	3 cut(s)	441, 681, 1440
Sau3AI	GATC	4 cut(s)	158, 707, 937, 1353
Sau96I	GGNCC	1 cut(s)	512
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	3 cut(s)	220, 240, 844
SfaNI	GCATC	3 cut(s)	290, 580, 691
SfcI	CTRYAG	1 cut(s)	760
SmiMI	CAYNNNNRTG	1 cut(s)	874
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	2 cut(s)	1455, 1550
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	4 cut(s)	237, 916, 1198, 1261
TaqI	TCGA	3 cut(s)	157, 706, 1660
TaqII	GACCGA	1 cut(s)	1083
TatI	WGTACW	2 cut(s)	32, 1047
TfiI	GAWTC	5 cut(s)	141, 634, 1290, 1385, 1799
Tru1I	TTAA	8 cut(s)	59, 321, 528, 1014, 1272, 1476, 1595, 1767
Tru9I	TTAA	8 cut(s)	59, 321, 528, 1014, 1272, 1476, 1595, 1767
TseFI	GTSAC	7 cut(s)	49, 742, 865, 1038, 1294, 1526, 1777
TseI	GCWGC	3 cut(s)	440, 680, 1439
Tsp45I	GTSAC	7 cut(s)	49, 742, 865, 1038, 1294, 1526, 1777
TspGWI	ACGGA	1 cut(s)	687
VneI	GTGCAC	2 cut(s)	216, 840
VspI	ATTAAT	1 cut(s)	1272
XagI	CCTNNNNNAGG	1 cut(s)	72
XceI	RCATGY	2 cut(s)	1046, 1439
XmiI	GTMKAC	2 cut(s)	202, 1660
XmnI	GAANNNNTTC	2 cut(s)	462, 1518
XspI	CTAG	2 cut(s)	1455, 1550
ZraI	GACGTC	1 cut(s)	914
ZrmI	AGTACT	1 cut(s)	34
Zsp2I	ATGCAT	1 cut(s)	1546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.