Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004268.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

36870 .. 38260

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004268.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atgggaggtcgtcatccaatttccattattactgaccaagacttggcaatgaaaggagcaattgccaagatatttccaaatactcgccatcgtttatgcctttggcatatcaagaagaagtttgttgagaagctgtcccatgtgtactataagaaatcgaaattcaagaaggagatgaagaaatgtattcaattaacatacaagactgaagattttgaagaaaaatggaagactttgatgacagaaaatggattggaagaaaatgaatggttaaataatctttatgagatacgaatgaatactactggatgtagtgagggaattaattcatttttcgatggatttgttacttcaacaacaaatcttagagaatttgttgttaaatatgatcaagcactaaagaggattatagataatgaaagtgatgaagactttgaaacagaacacaagtttcgtatcgtgaatgatgatgaattccttttgaaagatgcagcaaagttgtataccagaaatgttttcaacaaattcaaggtacaatggagtcaaattaagcactacaaggttgacgaaagggaatgcgacaatgaatggcactcatacctggtgaaaaaaagacttggagaacatgagcaagattttatggtgaagttagatttgacaacatacaagggttcttgtgagtgccaaaactttgagtttgttggaatactttgtcggcacttgttaaaagtattttcacgtctggatattgaaacaataccagcacattttattcttccaacatggagacaagaagcaaacaaatttaggataatggattctgaagatttggtgaaaagtgttggtaaagaagaatcagaagctgtaagacttagccatatgtgtcaccaagcaactaaattggcctgtattgctgcaccttcaaaggagggatacacaatcttcatggatgctttaaatgaagtatcaagaaaattgccaaaaatttcagatcagcctgctatcattagggaaatgagtgttcctctaaaccaagatgatcatactaccatagaaactagtgcttccccaaatagagatgatccatgtactaatattctttcttcccagtcattgctcttggacccaaatatctctaagaccaaaggtaggaagaaagaaactaagagttctggtagaataaagagtggtgttgtgttggccatggagacagggaaaagaaggtgtacattatgctccaagtcaggacacaacaaacaaacttgttctttgaattcacaaagaagaaagattcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

432

Amino Acids

50.23

Weight (kDa)

8.84

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	1076
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	7 cut(s)	161, 371, 473, 524, 803, 984, 1273
AcuI	CTGAAG	2 cut(s)	228, 843
AfaI	GTAC	4 cut(s)	146, 534, 1090, 1228
AfiI	CCNNNNNNNGG	2 cut(s)	43, 1149
AhlI	ACTAGT	1 cut(s)	1058
AjiI	CACGTC	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	2 cut(s)	133, 863
AluI	AGCT	2 cut(s)	133, 863
Alw26I	GTCTC	2 cut(s)	781, 1202
AlwI	GGATC	1 cut(s)	1076
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	2 cut(s)	903, 1200
ApeKI	GCWGC	2 cut(s)	491, 914
ApoI	RAATTY	7 cut(s)	161, 371, 473, 524, 803, 984, 1273
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	1123
AsuHPI	GGTGA	4 cut(s)	616, 655, 844, 878
AvaII	GGWCC	1 cut(s)	1123
BalI	TGGCCA	1 cut(s)	1202
BbsI	GAAGAC	2 cut(s)	236, 435
BbvI	GCAGC	2 cut(s)	503, 901
BccI	CCATC	2 cut(s)	96, 332
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	926
BclI	TGATCA	2 cut(s)	388, 1039
BcoDI	GTCTC	2 cut(s)	781, 1202
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	1 cut(s)	1059
BfuI	GTATCC	1 cut(s)	926
BisI	GCNGC	2 cut(s)	492, 915
BlsI	GCNGC	2 cut(s)	493, 916
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	1123
BmgBI	CACGTC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	1123
BmiI	GGNNCC	1 cut(s)	1125
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	1102
BmsI	GCATC	2 cut(s)	478, 940
BmuI	ACTGGG	1 cut(s)	1102
BpiI	GAAGAC	2 cut(s)	236, 435
BplI	GAGNNNNNCTC	2 cut(s)	1009, 1041
BsaJI	CCNNGG	1 cut(s)	1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 1149
Bse1I	ACTGG	2 cut(s)	310, 1108
Bse3DI	GCAATG	2 cut(s)	54, 1112
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	3 cut(s)	13, 314, 955
BseLI	CCNNNNNNNGG	2 cut(s)	43, 1149
BseMI	GCAATG	2 cut(s)	54, 1112
BseNI	ACTGG	2 cut(s)	310, 1108
BseXI	GCAGC	2 cut(s)	503, 901
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	2 cut(s)	905, 1202
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	43, 1149
BsmAI	GTCTC	2 cut(s)	781, 1202
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	905, 1202
Bsp1407I	TGTACA	1 cut(s)	1226
Bsp143I	GATC	4 cut(s)	388, 991, 1039, 1081
Bsp19I	CCATGG	1 cut(s)	1203
BspANI	GGCC	2 cut(s)	905, 1202
BspLI	GGNNCC	1 cut(s)	1125
BspPI	GGATC	1 cut(s)	1076
BsrDI	GCAATG	2 cut(s)	54, 1112
BsrGI	TGTACA	1 cut(s)	1226
BsrI	ACTGG	2 cut(s)	310, 1108
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	4 cut(s)	388, 991, 1039, 1081
BssNAI	GTATAC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	1203
Bst1107I	GTATAC	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	1226
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	4 cut(s)	365, 872, 1137, 1164
BstDSI	CCRYGG	1 cut(s)	1203
BstF5I	GGATG	3 cut(s)	13, 314, 955
BstKTI	GATC	4 cut(s)	391, 994, 1042, 1084
BstMAI	GTCTC	2 cut(s)	781, 1202
BstMBI	GATC	4 cut(s)	388, 991, 1039, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstNI	CCWGG	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	503, 901
BstV2I	GAAGAC	2 cut(s)	236, 435
BstZ17I	GTATAC	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	905, 1202
BtgI	CCRYGG	1 cut(s)	1203
BtrI	CACGTC	1 cut(s)	740
BtsCI	GGATG	3 cut(s)	13, 314, 955
Cac8I	GCNNGC	1 cut(s)	999
CaiI	CAGNNNCTG	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	1123
CsiI	ACCWGGT	1 cut(s)	600
Csp6I	GTAC	4 cut(s)	145, 533, 1089, 1227
CviAII	CATG	6 cut(s)	140, 626, 783, 946, 1086, 1204
CviJI	RGCY	6 cut(s)	133, 863, 876, 905, 997, 1202
CviKI_1	RGCY	6 cut(s)	133, 863, 876, 905, 997, 1202
CviQI	GTAC	4 cut(s)	145, 533, 1089, 1227
DdeI	CTNAG	4 cut(s)	365, 872, 1137, 1164
DpnI	GATC	4 cut(s)	390, 993, 1041, 1083
DpnII	GATC	4 cut(s)	388, 991, 1039, 1081
DraI	TTTAAA	1 cut(s)	957
EaeI	YGGCCR	1 cut(s)	1200
Eco130I	CCWWGG	1 cut(s)	1203
Eco47I	GGWCC	1 cut(s)	1123
Eco57I	CTGAAG	2 cut(s)	228, 843
EcoRI	GAATTC	2 cut(s)	473, 1273
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	1203
ErhI	CCWWGG	1 cut(s)	1203
FaeI	CATG	6 cut(s)	143, 629, 786, 949, 1089, 1207
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	6 cut(s)	139, 625, 782, 945, 1085, 1203
FauNDI	CATATG	1 cut(s)	879
FbaI	TGATCA	2 cut(s)	388, 1039
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	2 cut(s)	492, 915
FokI	GGATG	2 cut(s)	321, 962
Fsp4HI	GCNGC	2 cut(s)	492, 915
FspBI	CTAG	1 cut(s)	1059
GluI	GCNGC	2 cut(s)	492, 915
HaeIII	GGCC	2 cut(s)	905, 1202
Hin1II	CATG	6 cut(s)	143, 629, 786, 949, 1089, 1207
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	4 cut(s)	541, 818, 854, 1291
HphI	GGTGA	4 cut(s)	616, 655, 844, 878
Hpy166II	GTNNAC	4 cut(s)	145, 504, 565, 1227
Hpy188I	TCNGA	3 cut(s)	823, 859, 991
Hpy188III	TCNNGA	6 cut(s)	112, 166, 460, 743, 969, 1245
Hpy8I	GTNNAC	4 cut(s)	145, 504, 565, 1227
HpyAV	CCTTC	3 cut(s)	163, 930, 1215
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	2 cut(s)	491, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	4 cut(s)	365, 872, 1137, 1164
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	6 cut(s)	143, 629, 786, 949, 1089, 1207
Ksp22I	TGATCA	2 cut(s)	388, 1039
Kzo9I	GATC	4 cut(s)	388, 991, 1039, 1081
LmnI	GCTCC	2 cut(s)	56, 1241
Lsp1109I	GCAGC	2 cut(s)	503, 901
LweI	GCATC	2 cut(s)	478, 940
MabI	ACCWGGT	1 cut(s)	600
MaeI	CTAG	1 cut(s)	1059
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	2 cut(s)	346, 884
MalI	GATC	4 cut(s)	390, 993, 1041, 1083
MboI	GATC	4 cut(s)	388, 991, 1039, 1081
MfeI	CAATTG	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	1202
MluNI	TGGCCA	1 cut(s)	1202
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	2 cut(s)	682, 803
MnlI	CCTC	4 cut(s)	310, 396, 922, 1035
Mox20I	TGGCCA	1 cut(s)	1202
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	1202
MseI	TTAA	7 cut(s)	194, 272, 324, 381, 549, 725, 956
Msp20I	TGGCCA	1 cut(s)	1202
MspR9I	CCNGG	1 cut(s)	602
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	911
NcoI	CCATGG	1 cut(s)	1203
NdeI	CATATG	1 cut(s)	879
NdeII	GATC	4 cut(s)	388, 991, 1039, 1081
NlaIII	CATG	6 cut(s)	143, 629, 786, 949, 1089, 1207
NlaIV	GGNNCC	1 cut(s)	1125
NmuCI	GTSAC	1 cut(s)	884
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	818, 854, 1291
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	493, 916
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	1125
PspPI	GGNCC	1 cut(s)	1123
PstNI	CAGNNNCTG	1 cut(s)	863
RsaI	GTAC	4 cut(s)	146, 534, 1090, 1228
RsaNI	GTAC	4 cut(s)	145, 533, 1089, 1227
SaqAI	TTAA	7 cut(s)	194, 272, 324, 381, 549, 725, 956
SatI	GCNGC	2 cut(s)	492, 915
Sau3AI	GATC	4 cut(s)	388, 991, 1039, 1081
Sau96I	GGNCC	1 cut(s)	1123
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	1 cut(s)	602
SexAI	ACCWGGT	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	478, 940
SinI	GGWCC	1 cut(s)	1123
SpeI	ACTAGT	1 cut(s)	1058
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	1 cut(s)	1059
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	1203
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	2 cut(s)	158, 336
TatI	WGTACW	3 cut(s)	144, 1088, 1226
TfiI	GAWTC	3 cut(s)	818, 854, 1291
Tru1I	TTAA	7 cut(s)	194, 272, 324, 381, 549, 725, 956
Tru9I	TTAA	7 cut(s)	194, 272, 324, 381, 549, 725, 956
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	2 cut(s)	491, 914
Tsp45I	GTSAC	1 cut(s)	884
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	1123
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	7 cut(s)	161, 371, 473, 524, 803, 984, 1273
XmiI	GTMKAC	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.