Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001889.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

84716 .. 87535

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001889.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgcggctgccggaatatgggtgtggctttggtgttctctgccctgcagttttgttcagagggtgttgggttgggctgagaaacaaccttcctctggttcttcgtgggaaccgccccaaggctggtggggtaggcggcggcgttttgagtagagcggccggaactgggaaaaagcaagctgagaatccccaatttttttatgcaatccaatgcgacgaagatagaagagcaactaatttcttttgggtcgactctcgatcacggacagcttatgaatattttagagatgtggtcacattcaacacaacttataggacaaacaagtatgacatgccgtttgcgccattcataggagtaaaccaccactggcaatcaatacaattcggctatgcacttctacaagatgagacggaggctacctttttttggttatttgagacatggctagaagcaatgggaggtcgtcatccaatttccattattactgaccaagacttggcaatgaaaggagcaattgccaagatatttccaaatactcgccatcgtttatgcctttggcatatcaagaagaagtttgttgagaaactgtcccatgtgtactataagaaatcgaaattcaagaaggagatgaagaaatgtattcaattaacatacaagactgaagattttgaagaaaaatggaagactttgatgacagaaaatggattggaagaaaatgaatggttaaataatctttatgagatacttacttcttgggtgccggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

255

Amino Acids

29.8

Weight (kDa)

9.12

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	757
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	5 cut(s)	4, 112, 135, 138, 155
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	681
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	8 cut(s)	17, 94, 118, 122, 165, 350, 426, 496
AgsI	TTSAA	4 cut(s)	301, 619, 644, 671
AluBI	AGCT	2 cut(s)	179, 269
AluI	AGCT	2 cut(s)	179, 269
Alw26I	GTCTC	2 cut(s)	401, 431
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	757
BbsI	GAAGAC	1 cut(s)	689
BccI	CCATC	1 cut(s)	549
BceAI	ACGGC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	401, 431
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	5 cut(s)	5, 8, 136, 139, 156
BlsI	GCNGC	5 cut(s)	6, 9, 137, 140, 157
BmiI	GGNNCC	2 cut(s)	110, 759
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	8 cut(s)	17, 94, 118, 122, 165, 350, 426, 496
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	2 cut(s)	169, 371
Bse3DI	GCAATG	2 cut(s)	459, 507
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	8 cut(s)	17, 94, 118, 122, 165, 350, 426, 496
BseMI	GCAATG	2 cut(s)	459, 507
BseMII	CTCAG	2 cut(s)	68, 171
BseNI	ACTGG	2 cut(s)	169, 371
BseX3I	CGGCCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	757
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	11, 159, 761
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	8 cut(s)	17, 94, 118, 122, 165, 350, 426, 496
BsmAI	GTCTC	2 cut(s)	401, 431
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	5 cut(s)	4, 112, 135, 138, 155
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	69, 172
BspLI	GGNNCC	2 cut(s)	110, 759
BspMAI	CTGCAG	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	757
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	459, 507
BsrFI	RCCGGY	1 cut(s)	760
BsrI	ACTGG	2 cut(s)	169, 371
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	77, 180
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	2 cut(s)	401, 431
BstMBI	GATC	1 cut(s)	257
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	689
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	760
Csp6I	GTAC	1 cut(s)	598
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	3 cut(s)	331, 441, 593
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	77, 180
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	3 cut(s)	334, 444, 596
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	3 cut(s)	330, 440, 592
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	5, 8, 136, 139, 156
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	5 cut(s)	5, 8, 136, 139, 156
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	5 cut(s)	5, 8, 136, 139, 156
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	11, 159, 761
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	334, 444, 596
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	184, 251
HpaII	CCGG	3 cut(s)	11, 159, 761
Hpy166II	GTNNAC	3 cut(s)	250, 358, 598
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	3 cut(s)	255, 565, 619
Hpy8I	GTNNAC	3 cut(s)	250, 358, 598
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	98, 616
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	47, 203, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	77, 180
Hsp92II	CATG	3 cut(s)	334, 444, 596
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	257
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	7 cut(s)	24, 57, 80, 108, 150, 172, 352
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	259
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	257
MboII	GAAGA	9 cut(s)	92, 230, 237, 580, 643, 674, 683, 694, 722
MfeI	CAATTG	1 cut(s)	513
MluCI	AATT	7 cut(s)	191, 235, 380, 471, 513, 614, 644
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	4 cut(s)	53, 102, 406, 452
MseI	TTAA	3 cut(s)	647, 725, 766
MspI	CCGG	3 cut(s)	11, 159, 761
MunI	CAATTG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	334, 444, 596
NlaIV	GGNNCC	2 cut(s)	110, 759
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	6, 9, 137, 140, 157
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	110, 759
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SalI	GTCGAC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	647, 725, 766
SatI	GCNGC	5 cut(s)	5, 8, 136, 139, 156
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	245
SetI	ASST	5 cut(s)	90, 181, 271, 422, 463
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	7 cut(s)	191, 235, 380, 471, 513, 614, 644
SsiI	CCGC	5 cut(s)	4, 112, 135, 138, 155
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	249, 256, 611
TasI	AATT	7 cut(s)	191, 235, 380, 471, 513, 614, 644
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	4 cut(s)	7, 138, 141, 158
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	3 cut(s)	647, 725, 766
Tru9I	TTAA	3 cut(s)	647, 725, 766
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	288, 337, 518, 644, 732
TspGWI	ACGGA	2 cut(s)	277, 425
TspRI	CASTG	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.