Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005030.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 583

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005030.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

atggatgccgaagccctactaaagaatgatggtaaagaaaaatcagaagcattgagatttagtcatatgtgtcggagagctactcaactagcttgttatgcagcaccttcagatgaggcctacacaatgtacatggatggtttagatgaattgtcaaaaaaaatttcagaagttaataagcaggtgtcaaaagaagatgctatggagtctcaagataatatttttcgagatgaagcagatcaatgtaagagtaagtcctttgagtcattgcttttagatccaaatatctcaaaaaccaagggtagaaagaaggatgagaatagtagaagaaaaactaaaagctctaagaggataaaaggtggtatggagttggctcaaagcaagcaaagaaagtgtacaatgggccaacaaccaggacataataatcttacttgcattttgaatccagatgcaaaaagaaaaacgattgtttcaaaggatcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

161

Amino Acids

18.23

Weight (kDa)

9.15

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	131, 397
AgsI	TTSAA	2 cut(s)	442, 474
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	80, 92, 342
AluI	AGCT	3 cut(s)	80, 92, 342
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	117, 403
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	23, 131
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	187, 439
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpuEI	CTTGAG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	10, 142, 319
BseMI	GCAATG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	119, 405
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	119, 405
Bsp1407I	TGTACA	2 cut(s)	129, 395
Bsp143I	GATC	3 cut(s)	238, 277, 478
BspANI	GGCC	2 cut(s)	119, 405
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	266
BsrGI	TGTACA	2 cut(s)	129, 395
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	238, 277, 478
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	414
BstAUI	TGTACA	2 cut(s)	129, 395
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	10, 142, 319
BstKTI	GATC	3 cut(s)	241, 280, 481
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	238, 277, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	119, 405
BtsCI	GGATG	3 cut(s)	10, 142, 319
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	130, 396
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	14, 80, 92, 119, 342, 374, 405
CviKI_1	RGCY	7 cut(s)	14, 80, 92, 119, 342, 374, 405
CviQI	GTAC	2 cut(s)	130, 396
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	240, 279, 480
DpnII	GATC	3 cut(s)	238, 277, 478
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	136
FaiI	YATR	7 cut(s)	66, 68, 99, 134, 203, 365, 420
FatI	CATG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	17, 149, 326
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	119, 405
Hin1II	CATG	1 cut(s)	136
HinfI	GANTC	3 cut(s)	206, 263, 442
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	4 cut(s)	46, 75, 112, 169
Hpy188III	TCNNGA	3 cut(s)	212, 227, 446
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	2 cut(s)	117, 304
HpyCH4V	TGCA	3 cut(s)	101, 435, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	238, 277, 478
LpnPI	CCDG	4 cut(s)	167, 399, 426, 459
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	187, 439
MaeI	CTAG	1 cut(s)	89
MalI	GATC	3 cut(s)	240, 279, 480
MboI	GATC	3 cut(s)	238, 277, 478
MboII	GAAGA	2 cut(s)	206, 339
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	2 cut(s)	149, 162
MlyI	GAGTC	2 cut(s)	215, 272
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	109, 342
MseI	TTAA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	3 cut(s)	238, 277, 478
NlaIII	CATG	1 cut(s)	136
PaqCI	CACCTGC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	214, 271
PpsI	GAGTC	2 cut(s)	214, 271
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	131, 397
RsaNI	GTAC	2 cut(s)	130, 396
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	238, 277, 478
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	2 cut(s)	215, 272
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	6 cut(s)	82, 94, 109, 186, 344, 361
SfaNI	GCATC	2 cut(s)	187, 439
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	149, 162
SseBI	AGGCCT	1 cut(s)	119
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	149, 162
TatI	WGTACW	2 cut(s)	129, 395
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	162, 246
XapI	RAATTY	1 cut(s)	162
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.