Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001545.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

127866 .. 130531

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001545.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggattctgaagccttggttaagaatgatggtaaagaacaattagaagcattgagatttagtcatatgtgtcggagagctactcagctagcttgttatgcagcaccttcagatgaggcctacaaaatgttcatggatggtttagatgaactgtcaaaaaaaatttctgaagttaataaggtatcaaaagaagatgttgtggagtctcaagataatgttttccaagatgaagcagatcaacatacgagtaagtcatctgacacgttgcttttggatccaaatatctcaaaaaccaagggtagaaagaaggatgagaatagtagaagaaaaataaaaagttctaagaggataaaaggtggtatggagttggctcaaagcaagcagagaaagtgcacattgtgccaacagccaggacataataagcttacttgcactttaaatccggatgcaaaaagaaaaacgattgtttctacgaaccaaagaaatgcgaatatgcaagagtcagacaaagtttcggacgaggaagattcagatagtgatggcgacagcgagagaggtgagggttttgaagcagagggcgtcgcggctacaattcgttgcagtaaaattgaagttgatgctgataatgaggacaggtttaagcggaggagcattctttcatgctttggtgccactgtcggcttggaaaatccagatgttatcccttccttactcactttggcattgaatgatattatgacctatgataaggtcaggcaaaaaactttgccctgtgattgctgtgaacatcatagtatttccttgtctggttatatagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

273

Amino Acids

30.51

Weight (kDa)

5.46

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	668
AccII	CGCG	1 cut(s)	584
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	584, 643
AclWI	GGATC	2 cut(s)	269, 282
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	3 cut(s)	30, 93, 189
AcyI	GRCGYC	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	569, 611, 727
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	4 cut(s)	80, 88, 92, 424
AluI	AGCT	4 cut(s)	80, 88, 92, 424
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	269, 282
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	1 cut(s)	117
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	569
AsuNHI	GCTAGC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	3 cut(s)	23, 131, 533
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	102, 585
BlsI	GCNGC	2 cut(s)	103, 586
Bme1390I	CCNGG	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	276, 670
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	436, 607
BmtI	GCTAGC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpuEI	CTTGAG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	15, 294
BsaWI	WCCGGW	1 cut(s)	442
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	15, 294
BseGI	GGATG	3 cut(s)	142, 316, 451
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	661
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	651
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	235, 274
BspACI	CCGC	2 cut(s)	584, 643
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	2 cut(s)	276, 670
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	269, 282
BspT107I	GGYRCC	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	15, 294
BssMI	GATC	2 cut(s)	235, 274
BssNI	GRCGYC	1 cut(s)	579
BssT1I	CCWWGG	2 cut(s)	15, 294
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	153, 676
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	90, 380
BstDEI	CTNAG	2 cut(s)	84, 342
BstF5I	GGATG	3 cut(s)	142, 316, 451
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	2 cut(s)	238, 277
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	235, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 399
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	142, 316, 451
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	2 cut(s)	90, 380
CseI	GACGC	1 cut(s)	568
CviAII	CATG	2 cut(s)	133, 660
DdeI	CTNAG	2 cut(s)	84, 342
DpnI	GATC	2 cut(s)	237, 276
DpnII	GATC	2 cut(s)	235, 274
DraI	TTTAAA	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	15, 294
Eco147I	AGGCCT	1 cut(s)	119
Eco57I	CTGAAG	3 cut(s)	30, 93, 189
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	15, 294
ErhI	CCWWGG	2 cut(s)	15, 294
FaeI	CATG	2 cut(s)	136, 663
FatI	CATG	2 cut(s)	132, 659
FauNDI	CATATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	102, 585
FokI	GGATG	3 cut(s)	149, 323, 458
Fsp4HI	GCNGC	2 cut(s)	102, 585
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	102, 585
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	2 cut(s)	136, 663
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	5, 203, 500, 527
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	393, 785
Hpy188I	TCNGA	8 cut(s)	10, 75, 112, 169, 259, 505, 517, 532
Hpy188III	TCNNGA	3 cut(s)	209, 443, 692
Hpy8I	GTNNAC	2 cut(s)	393, 785
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	3 cut(s)	117, 301, 714
HpyCH4III	ACNGT	2 cut(s)	153, 676
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	101, 393, 432, 449, 496, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 399
HpyF3I	CTNAG	2 cut(s)	84, 342
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	136, 663
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	235, 274
LmnI	GCTCC	1 cut(s)	648
LpnPI	CCDG	8 cut(s)	396, 423, 456, 619, 705, 739, 784, 792
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	436, 607
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	263
MalI	GATC	2 cut(s)	237, 276
MboI	GATC	2 cut(s)	235, 274
MboII	GAAGA	3 cut(s)	203, 336, 536
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	4 cut(s)	41, 162, 591, 606
MlyI	GAGTC	2 cut(s)	212, 509
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	109, 339, 514, 548, 553, 568, 622, 639
MroI	TCCGGA	1 cut(s)	442
MseI	TTAA	4 cut(s)	21, 174, 437, 639
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	98, 399
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	2 cut(s)	235, 274
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	136, 663
NlaIV	GGNNCC	2 cut(s)	276, 670
PceI	AGGCCT	1 cut(s)	119
PctI	GAATGC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	5, 527
PkrI	GCNGC	2 cut(s)	103, 586
PleI	GAGTC	2 cut(s)	211, 508
PpsI	GAGTC	2 cut(s)	211, 508
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	276, 670
PsuI	RGATCY	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	21, 174, 437, 639
SatI	GCNGC	2 cut(s)	102, 585
Sau3AI	GATC	2 cut(s)	235, 274
SchI	GAGTC	2 cut(s)	212, 509
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	436, 607
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	4 cut(s)	41, 162, 591, 606
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	584, 643
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	15, 294
TaaI	ACNGT	2 cut(s)	153, 676
TaiI	ACGT	1 cut(s)	266
TasI	AATT	4 cut(s)	41, 162, 591, 606
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	5, 527
Tru1I	TTAA	4 cut(s)	21, 174, 437, 639
Tru9I	TTAA	4 cut(s)	21, 174, 437, 639
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	121, 162, 243, 648
TspRI	CASTG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.