Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004950.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Forward (+)

14076 .. 15332

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004950.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgaagatgaagtcaaataaacatatgcctaaagcagcgaggagtatgactgaaatattctataaagaaaatttgccgattgcaaaagttcattcaatccttggtggtgctcaaattggttttaacaaaagagattgttataaccacttaagaaatgttcgtcatagacaattggatggtggagatgctcaatcagtcctcacttacttcaggaaaaagcaagctaagaatccccaatttttttatgcaatccaatgcgacgaagatggaagagcaactaatttcttttgggtcgactctcgatcacggacagcttatgaatattttggagatgtggtcacattcgacacaacttataggacaaacaagtatgatatgccgtttgcgccattcacaggagtaaaccaccactggcaatcaatacaattaaatactcgccatcgtttaagcctttggcatatcaagaagaagtttgttgagaagttgtcccatgtgtaccataagaaatcgaaattcaagaaggagatgaagaaatgtattcaattaacatacaagactgaagattttgaagaaaaatggaagactttgatgacagaaaatggattggaagaaaatgaatggttaaataatctttatgagatacgtacttcttgggtgccggtttatcatcgtggaacattttttgcaggattgaatactactggacgtagtgagggaattaattcatttttcgatggatttgttacttcaacaacaaatcttagagaatttgttgttaaatatgatcaagcactaaagaggattatagataatgaaagtgatgaagactttgaaacagaacacaagtttcgtatcgtgaatgatgatgaattccttttgaaagatgcagcaaagttgtatactagaaatgttttcaacaaattcaaggtacaatggagtcaaattaagcactacaaggttgacgaaaggcaatgcgacaatgaatggcactcatacttggtgaaaaaaagacttggagaacatgagaaagattttatggtgaagttagatttgacaacatacaagggttcttgtgagtgccaaaactttgagtttgttggaatactttgtcggcacttgttaaaagtattttcacgtctggatattgaaacaataccagcacattttattcttccaagatggagacaagaagcaaacaaatttaggataatggattctgaagatttggtgaaaaatgttgataaagaagaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

418

Amino Acids

50.0

Weight (kDa)

9.06

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	655
AccI	GTMKAC	2 cut(s)	294, 899
AcsI	RAATTY	6 cut(s)	70, 512, 767, 869, 920, 1199
AcuI	CTGAAG	3 cut(s)	193, 579, 1239
AfaI	GTAC	3 cut(s)	497, 646, 930
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflII	CTTAAG	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	1136
AluBI	AGCT	2 cut(s)	224, 314
AluI	AGCT	2 cut(s)	224, 314
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	1177
ApeKI	GCWGC	2 cut(s)	35, 887
ApoI	RAATTY	6 cut(s)	70, 512, 767, 869, 920, 1199
AseI	ATTAAT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	721
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	1012, 1051, 1240
BanI	GGYRCC	1 cut(s)	655
BbsI	GAAGAC	2 cut(s)	587, 831
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	47, 899
BccI	CCATC	5 cut(s)	170, 260, 447, 728, 1173
BceAI	ACGGC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	1177
BfaI	CTAG	1 cut(s)	903
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	2 cut(s)	36, 888
BlsI	GCNGC	2 cut(s)	37, 889
BmgBI	CACGTC	1 cut(s)	1136
BmiI	GGNNCC	1 cut(s)	657
BmsI	GCATC	2 cut(s)	175, 874
BpiI	GAAGAC	2 cut(s)	587, 831
BsaAI	YACGTR	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	416, 706
Bse3DI	GCAATG	1 cut(s)	977
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	977
BseNI	ACTGG	2 cut(s)	416, 706
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	47, 899
BshNI	GGYRCC	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	1177
BsmFI	GGGAC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	302, 784
BspLI	GGNNCC	1 cut(s)	657
BspQI	GCTCTTC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	655
BspTI	CTTAAG	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	977
BsrFI	RCCGGY	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	416, 706
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	302, 784
BssNAI	GTATAC	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	900
Bst6I	CTCTTC	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	225, 761
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	305, 787
BstMAI	GTCTC	1 cut(s)	1177
BstMBI	GATC	2 cut(s)	302, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstSNI	TACGTA	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	47, 899
BstV2I	GAAGAC	2 cut(s)	587, 831
BstZ17I	GTATAC	1 cut(s)	900
BtrI	CACGTC	1 cut(s)	1136
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	658
Csp6I	GTAC	3 cut(s)	496, 645, 929
CviAII	CATG	2 cut(s)	491, 1022
CviJI	RGCY	3 cut(s)	224, 314, 450
CviKI_1	RGCY	3 cut(s)	224, 314, 450
CviQI	GTAC	3 cut(s)	496, 645, 929
DdeI	CTNAG	2 cut(s)	225, 761
DpnI	GATC	2 cut(s)	304, 786
DpnII	GATC	2 cut(s)	302, 784
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco105I	TACGTA	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	193, 579, 1239
EcoRI	GAATTC	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	494, 1025
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	490, 1021
FauNDI	CATATG	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	294, 899
Fnu4HI	GCNGC	2 cut(s)	36, 888
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	36, 888
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	36, 888
HapII	CCGG	1 cut(s)	659
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	494, 1025
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	2 cut(s)	295, 961
HindII	GTYRAC	2 cut(s)	295, 961
HinfI	GANTC	5 cut(s)	229, 296, 937, 1214, 1250
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	3 cut(s)	1012, 1051, 1240
Hpy166II	GTNNAC	5 cut(s)	295, 403, 496, 900, 961
Hpy188I	TCNGA	1 cut(s)	1219
Hpy188III	TCNNGA	6 cut(s)	211, 300, 463, 517, 856, 1139
Hpy8I	GTNNAC	5 cut(s)	295, 403, 496, 900, 961
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	514
HpyCH4IV	ACGT	3 cut(s)	643, 706, 1135
HpyCH4V	TGCA	4 cut(s)	83, 248, 686, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	2 cut(s)	225, 761
HpySE526I	ACGT	3 cut(s)	643, 706, 1135
Hsp92II	CATG	2 cut(s)	494, 1025
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	302, 784
LguI	GCTCTTC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	196, 381, 397, 672, 672, 687, 1124, 1170
Lsp1109I	GCAGC	2 cut(s)	47, 899
LweI	GCATC	2 cut(s)	175, 874
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	3 cut(s)	643, 706, 1135
MaeIII	GTNAC	2 cut(s)	337, 742
MalI	GATC	2 cut(s)	304, 786
MboI	GATC	2 cut(s)	302, 784
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	290, 946
MmeI	TCCRAC	1 cut(s)	1078
MnlI	CCTC	4 cut(s)	33, 209, 706, 792
MroXI	GAANNNNTTC	1 cut(s)	721
MspCI	CTTAAG	1 cut(s)	148
MspI	CCGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	2 cut(s)	302, 784
NlaIII	CATG	2 cut(s)	494, 1025
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	229, 1214, 1250
PkrI	GCNGC	2 cut(s)	37, 889
PleI	GAGTC	2 cut(s)	290, 945
PpsI	GAGTC	2 cut(s)	290, 945
Ppu21I	YACGTR	1 cut(s)	644
PshBI	ATTAAT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	657
RsaI	GTAC	3 cut(s)	497, 646, 930
RsaNI	GTAC	3 cut(s)	496, 645, 929
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	265
SatI	GCNGC	2 cut(s)	36, 888
Sau3AI	GATC	2 cut(s)	302, 784
SchI	GAGTC	2 cut(s)	290, 946
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	226, 316, 646, 709, 930, 960, 1138
SfaNI	GCATC	2 cut(s)	175, 874
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SnaBI	TACGTA	1 cut(s)	644
SspI	AATATT	2 cut(s)	57, 323
SspMI	CTAG	1 cut(s)	903
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	3 cut(s)	646, 709, 1138
TaqI	TCGA	5 cut(s)	294, 301, 345, 509, 732
TfiI	GAWTC	3 cut(s)	229, 1214, 1250
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	35, 887
Tsp45I	GTSAC	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	6 cut(s)	70, 512, 767, 869, 920, 1199
XmiI	GTMKAC	2 cut(s)	294, 899
XmnI	GAANNNNTTC	1 cut(s)	721
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.