Rorug03G0258300

acyl-CoA hydrolase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
24710797 .. 24711189
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0258300.1

Sequence Viewer

Length: 393 bp
ATGCATATATCACATATGCTCTTCCAATCATACCCGACCCAGCCGCTGTTATCACACATAATTGACCCACACCTCCACACTCCCACAGCGAATAGACGAAGCAGAAGACTAGACGAAGCTAGAAGACCAGACGAGCAGCAGAGGAATTCCGAAGCGGAAGAAGACGAGACGAGAATCAAGGAACTCCGAAGCGACTGGGTCTACGATTTTTCTTCTCTCTCTCGATCTGGGTCTGCGATTGACGAAGCTAGAAGACCAGACGAGCAGCAGATCGAGGAACTCCGAAGAGGAAGAAGACCAGACGAGAATCAAGGAACTCCGAAGCGATTGGGTCTGCGATTTTCTTCTCTCTCTCGATCTGAGATTGTCTCTCTCTCTCTCGATCTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

15.25

Weight (kDa)

6.21

Isoelectric Point (pI)

100.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 44, 155
AcsI RAATTY 1 cut(s) 145
AluBI AGCT 2 cut(s) 119, 248
AluI AGCT 2 cut(s) 119, 248
Alw26I GTCTC 2 cut(s) 161, 373
AlwNI CAGNNNCTG 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 136, 265
ApoI RAATTY 1 cut(s) 145
BbsI GAAGAC 5 cut(s) 112, 130, 168, 259, 301
BbvI GCAGC 2 cut(s) 148, 277
BcoDI GTCTC 2 cut(s) 161, 373
BfaI CTAG 3 cut(s) 110, 120, 249
BisI GCNGC 3 cut(s) 44, 137, 266
BlsI GCNGC 3 cut(s) 45, 138, 267
BmrI ACTGGG 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 5 cut(s) 112, 130, 168, 259, 301
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bse1I ACTGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 148, 277
BseYI CCCAGC 1 cut(s) 39
BsmAI GTCTC 2 cut(s) 161, 373
BsmBI CGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 224, 270, 356, 382
BspACI CCGC 2 cut(s) 44, 155
BspCNI CTCAG 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 200
BssMI GATC 4 cut(s) 224, 270, 356, 382
Bst6I CTCTTC 2 cut(s) 26, 280
BstDEI CTNAG 1 cut(s) 360
BstKTI GATC 4 cut(s) 227, 273, 359, 385
BstMAI GTCTC 2 cut(s) 161, 373
BstMBI GATC 4 cut(s) 224, 270, 356, 382
BstV1I GCAGC 2 cut(s) 148, 277
BstV2I GAAGAC 5 cut(s) 112, 130, 168, 259, 301
CaiI CAGNNNCTG 1 cut(s) 46
CviJI RGCY 3 cut(s) 43, 119, 248
CviKI_1 RGCY 3 cut(s) 43, 119, 248
DdeI CTNAG 1 cut(s) 360
DpnI GATC 4 cut(s) 226, 272, 358, 384
DpnII GATC 4 cut(s) 224, 270, 356, 382
Eam1104I CTCTTC 2 cut(s) 26, 280
EarI CTCTTC 2 cut(s) 26, 280
EcoRI GAATTC 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 161
FaiI YATR 6 cut(s) 6, 8, 15, 17, 31, 59
FauNDI CATATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 44, 137, 266
Fsp4HI GCNGC 3 cut(s) 44, 137, 266
FspBI CTAG 3 cut(s) 110, 120, 249
GluI GCNGC 3 cut(s) 44, 137, 266
GsaI CCCAGC 1 cut(s) 43
HinfI GANTC 2 cut(s) 174, 307
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 6 cut(s) 151, 188, 284, 321, 361, 387
Hpy188III TCNNGA 3 cut(s) 222, 354, 380
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 360
Kzo9I GATC 4 cut(s) 224, 270, 356, 382
LguI GCTCTTC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 53, 141, 181, 213, 270, 312
Lsp1109I GCAGC 2 cut(s) 148, 277
MaeI CTAG 3 cut(s) 110, 120, 249
MalI GATC 4 cut(s) 226, 272, 358, 384
MboI GATC 4 cut(s) 224, 270, 356, 382
MluCI AATT 3 cut(s) 60, 145, 388
MnlI CCTC 4 cut(s) 83, 135, 268, 281
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 46
NdeI CATATG 1 cut(s) 15
NdeII GATC 4 cut(s) 224, 270, 356, 382
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 174, 307
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 45, 138, 267
PspFI CCCAGC 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 3 cut(s) 44, 137, 266
Sau3AI GATC 4 cut(s) 224, 270, 356, 382
SetI ASST 3 cut(s) 75, 121, 250
Sse9I AATT 3 cut(s) 60, 145, 388
SsiI CCGC 2 cut(s) 44, 155
SspMI CTAG 3 cut(s) 110, 120, 249
TaqI TCGA 4 cut(s) 223, 273, 355, 381
TasI AATT 3 cut(s) 60, 145, 388
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 2 cut(s) 174, 307
TseI GCWGC 2 cut(s) 136, 265
Tth111I GACNNNGTC 1 cut(s) 197
XapI RAATTY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 3 cut(s) 110, 120, 249
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.