Rw5G008400

acyl-CoA hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004837
Physical Location & Seq
Forward (+)
9075881 .. 9077177
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008400.1

Sequence Viewer

Length: 1083 bp
ATGAAAGGAGCAATTGCCAAGATATTTCCAAATACTCACCCTCGTTTATGCCTTTGGCATATCAAGAAGAAGTTTATTGAGAAGCTGTCCCATGTGTACTATAAGAAATCGAAATTCAAGAAGGAGATGAAGAAATGTATTCAATTAACATACAAGACTGAAGATTTTGAAGAAAAATGGAAGACTTTGATGACAGAAAATGGATTGGAAGAAAATGAATGGTTAAATAATCTTTATGAGATATGTACTTCTTGTGTACCGATTTATCATAGTGGAACATTTTTTGCAGGAATGAATACTACTGGACAACACAAGTTTCGTATCGTGAATGATGATGAATTCCTTTTGAAAGATGCAGCAAAGTTGTATACCAGAAATGTTTTCAACAAATTCAAGGTACAATGGAAACATGAGCAAGATTTTATGGTGAAGTTAGATTTGACAACATACAAGGGTTCTTGTGAGTGCCAAAACTTTGAGTTTGTTGGAATACTTTGTCGGCACTTGTTAAAAGTATTTGCACGTCTGGATATTGAAACAATACCAGCACATTTTATTCTTCCAAGATGGAGACAAGAAGCAAACAAATTTAGGATAATGGATTCTGAAGATTTGGTGAAAAGTGTTGGTAAAGAAGAATCAAAAGCTGTAAGACTTAGCCATATGTGTCACCAAGCAACTAAATTGGCCTGTATTGCTCCACCTTCAAAGGAGGGATACACAATCTTCATGGATGCTTTAAATGAAGTATCAAGAAAATTGCCAAAAATTTCAGATCAGCCTACTATCATTAGGGAAATGAGTGTTCCTCTAAACCAAGATGATCATACTACCATGGAAACTAGTGCTTCCTCAAATAGAGATGATCCATGTACTAATATTCTTTCTTCCCAGTCATTGCTCTTGGACCCAAATATCTCTAAGACCAAAGGTAAGAAGAAAGAAACTAAGAGTTCTGGCATAATAAAGAGTGGTGTTGAGTTGGCCATGGAGACAGGGAAAAGAAGGTGTACATTATGCTCCAAGTCAGGATACAACAAACAAACTTGTTCTTTGAATTCACAAAGAAGAAAGATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

360

Amino Acids

41.68

Weight (kDa)

9.28

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 151 - 175 3.4e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 368
AclWI GGATC 1 cut(s) 860
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 6 cut(s) 113, 338, 389, 587, 768, 1057
AcuI CTGAAG 2 cut(s) 180, 627
AfaI GTAC 6 cut(s) 98, 247, 258, 399, 874, 1012
AhlI ACTAGT 1 cut(s) 842
AjiI CACGTC 1 cut(s) 524
AluBI AGCT 2 cut(s) 85, 647
AluI AGCT 2 cut(s) 85, 647
Alw26I GTCTC 2 cut(s) 565, 986
AlwI GGATC 1 cut(s) 860
AoxI GGCC 2 cut(s) 687, 984
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 6 cut(s) 113, 338, 389, 587, 768, 1057
AspS9I GGNCC 1 cut(s) 907
AsuHPI GGTGA 4 cut(s) 29, 439, 628, 662
AvaII GGWCC 1 cut(s) 907
BalI TGGCCA 1 cut(s) 986
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 561
BciVI GTATCC 2 cut(s) 710, 1025
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 565, 986
BcuI ACTAGT 1 cut(s) 842
BfaI CTAG 1 cut(s) 843
BfuI GTATCC 2 cut(s) 710, 1025
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 907
BmgBI CACGTC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 1 cut(s) 909
BmrI ACTGGG 1 cut(s) 886
BmsI GCATC 2 cut(s) 343, 724
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BsaJI CCNNGG 2 cut(s) 834, 987
Bse1I ACTGG 2 cut(s) 307, 892
Bse3DI GCAATG 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 834, 987
BseGI GGATG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 896
BseNI ACTGG 2 cut(s) 307, 892
BseXI GCAGC 1 cut(s) 368
BshFI GGCC 2 cut(s) 689, 986
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 565, 986
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 2 cut(s) 689, 986
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 3 cut(s) 775, 823, 865
Bsp19I CCATGG 2 cut(s) 834, 987
BspANI GGCC 2 cut(s) 689, 986
BspLI GGNNCC 1 cut(s) 909
BspPI GGATC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 896
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 2 cut(s) 307, 892
BssECI CCNNGG 2 cut(s) 834, 987
BssMI GATC 3 cut(s) 775, 823, 865
BssNAI GTATAC 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 834, 987
Bst1107I GTATAC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 1010
BstDEI CTNAG 3 cut(s) 656, 921, 948
BstDSI CCRYGG 2 cut(s) 834, 987
BstF5I GGATG 1 cut(s) 739
BstKTI GATC 3 cut(s) 778, 826, 868
BstMAI GTCTC 2 cut(s) 565, 986
BstMBI GATC 3 cut(s) 775, 823, 865
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 369
BsuI GTATCC 2 cut(s) 710, 1025
BsuRI GGCC 2 cut(s) 689, 986
BtgI CCRYGG 2 cut(s) 834, 987
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 907
Csp6I GTAC 6 cut(s) 97, 246, 257, 398, 873, 1011
CviAII CATG 6 cut(s) 92, 410, 730, 835, 870, 988
CviJI RGCY 6 cut(s) 85, 647, 660, 689, 781, 986
CviKI_1 RGCY 6 cut(s) 85, 647, 660, 689, 781, 986
CviQI GTAC 6 cut(s) 97, 246, 257, 398, 873, 1011
DdeI CTNAG 3 cut(s) 656, 921, 948
DpnI GATC 3 cut(s) 777, 825, 867
DpnII GATC 3 cut(s) 775, 823, 865
DraI TTTAAA 1 cut(s) 741
EaeI YGGCCR 1 cut(s) 984
Eco130I CCWWGG 2 cut(s) 834, 987
Eco47I GGWCC 1 cut(s) 907
Eco57I CTGAAG 2 cut(s) 180, 627
EcoRI GAATTC 2 cut(s) 338, 1057
EcoT14I CCWWGG 2 cut(s) 834, 987
ErhI CCWWGG 2 cut(s) 834, 987
FaeI CATG 6 cut(s) 95, 413, 733, 838, 873, 991
FaqI GGGAC 1 cut(s) 73
FatI CATG 6 cut(s) 91, 409, 729, 834, 869, 987
FauNDI CATATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 823
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 746
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 843
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 2 cut(s) 689, 986
Hin1II CATG 6 cut(s) 95, 413, 733, 838, 873, 991
HinfI GANTC 3 cut(s) 602, 638, 1075
HphI GGTGA 4 cut(s) 29, 439, 628, 662
Hpy166II GTNNAC 4 cut(s) 97, 257, 369, 1011
Hpy188I TCNGA 2 cut(s) 607, 775
Hpy188III TCNNGA 6 cut(s) 64, 118, 325, 527, 753, 1029
Hpy8I GTNNAC 4 cut(s) 97, 257, 369, 1011
HpyAV CCTTC 3 cut(s) 115, 714, 999
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 287, 356, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 3 cut(s) 656, 921, 948
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 6 cut(s) 95, 413, 733, 838, 873, 991
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 3 cut(s) 775, 823, 865
LmnI GCTCC 3 cut(s) 8, 703, 1025
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 343, 724
MaeI CTAG 1 cut(s) 843
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 777, 825, 867
MboI GATC 3 cut(s) 775, 823, 865
MfeI CAATTG 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 986
MluNI TGGCCA 1 cut(s) 986
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 4 cut(s) 51, 706, 819, 862
Mox20I TGGCCA 1 cut(s) 986
MscI TGGCCA 1 cut(s) 986
MseI TTAA 4 cut(s) 146, 224, 509, 740
Msp20I TGGCCA 1 cut(s) 986
MunI CAATTG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 695
NcoI CCATGG 2 cut(s) 834, 987
NdeI CATATG 1 cut(s) 663
NdeII GATC 3 cut(s) 775, 823, 865
NlaIII CATG 6 cut(s) 95, 413, 733, 838, 873, 991
NlaIV GGNNCC 1 cut(s) 909
NmuCI GTSAC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 602, 638, 1075
PkrI GCNGC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 909
PspPI GGNCC 1 cut(s) 907
RsaI GTAC 6 cut(s) 98, 247, 258, 399, 874, 1012
RsaNI GTAC 6 cut(s) 97, 246, 257, 398, 873, 1011
SaqAI TTAA 4 cut(s) 146, 224, 509, 740
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 775, 823, 865
Sau96I GGNCC 1 cut(s) 907
SetI ASST 7 cut(s) 87, 399, 526, 649, 706, 934, 1010
SfaNI GCATC 2 cut(s) 343, 724
SinI GGWCC 1 cut(s) 907
SpeI ACTAGT 1 cut(s) 842
SspI AATATT 1 cut(s) 880
SspMI CTAG 1 cut(s) 843
StyI CCWWGG 2 cut(s) 834, 987
TaiI ACGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 110
TatI WGTACW 4 cut(s) 96, 245, 872, 1010
TfiI GAWTC 3 cut(s) 602, 638, 1075
Tru1I TTAA 4 cut(s) 146, 224, 509, 740
Tru9I TTAA 4 cut(s) 146, 224, 509, 740
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 7 cut(s) 17, 143, 231, 308, 351, 718, 759
VpaK11BI GGWCC 1 cut(s) 907
XapI RAATTY 6 cut(s) 113, 338, 389, 587, 768, 1057
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.