FvH4_1g25683

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004837
Physical Location & Seq
Reverse (-)
17568515 .. 17576294
7780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25683.t1

Sequence Viewer

Length: 1050 bp
ATGCTTGCTTTCTACCACCAACAATATGGTAACAAGTGGGCAAAAATAGCAAGGTTTCTACATGGAAGTTCTCTCTCATCCGGCCGCCAAACCGGACGCCACCGGTTCCGTTCGACTCCTACAGTCGTCCTCCCTATTTCTGGAGTAGTCCTGCTCGTCGTCTGGAAGCCGCCACGAAGCGGCGGAGCTGCTGTTGTTCCGCCGGAAAGCCAGCGATTTCGACGGCTATTCCGGCCAAGTTTAGGTTTGGTTTTTGAATTCGGGTTGGTGCTTCGAGCCGTTTTCCGGCCGATTTCGGCCAAATTGGCTCAACTGTCAGACTTCAATGAAGATTCATCCCCTTCTCAATGCATGTCTCCGGTAGCAAACACATCTGAAGTAGAGGATGGTGAAATGAATACTCCAATAAGGAGAGTCGAACATTTAGAAGCCCCATATTTAGGTATGCTTTTTGAATCAATTGAAGAAGCAAGAAAGTATTATGAAGAATATGGTCGGCAAGAAGGCTTTTGGATTCGTACTCAATGTTCAGTCAAGACAAGATCACATTCTGATGAGGTGACTAGTTGTCGATTCGTTTGTGCACATCAAGGAAAATATATACGGAAGAAAAAACTAAATGAGGGGTGGAAAAAAGACCATCAAAAAGAGATATGTGATAATGAGAATGAGAATGAAAATGGGGATGTCAATGTAGAGAAAAGTGGGGATGTTAATACAAAGAAAGCAGCAGACAAAAATTGTTCTACTGCAAAATGTAGGTGCAAAGCTACCATGCGAGTAATTCATGAGAAGTGGTCGAACAAATGGAGAGTATCTGTTTTTAAGGACTTTCATAATCACAAAGTTGTTACTCCAGCAAGAAGAATGAAGATGAAGTCAAATAAATATATGCCCAAAGCAGCTAGGAGTATGACTGAAATATTCTATAAAGAAAACTTGCCGATTGCAAAAGTTCACTCAATCCTTGGTGGTGCTCATATTGGTTTTAACAAGAGAGATTGTTATAACCAGGGGCGTAGCTACAATGGGGCGAGAGGGTTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

350

Amino Acids

39.99

Weight (kDa)

9.77

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 159 - 284 4.8e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1008
AciI CCGC 5 cut(s) 85, 170, 180, 183, 200
AcoI YGGCCR 4 cut(s) 82, 233, 287, 297
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 5 cut(s) 140, 179, 242, 285, 440
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 5 cut(s) 257, 325, 455, 464, 1045
AhdI GACNNNNNGTC 1 cut(s) 567
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 1 cut(s) 1011
AluBI AGCT 4 cut(s) 188, 770, 905, 1023
AluI AGCT 4 cut(s) 188, 770, 905, 1023
Alw21I GWGCWC 2 cut(s) 586, 979
Alw26I GTCTC 1 cut(s) 360
Alw44I GTGCAC 1 cut(s) 582
AoxI GGCC 4 cut(s) 82, 233, 287, 297
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 188, 728, 902
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 401, 571
BaeGI GKGCMC 1 cut(s) 586
Bbv12I GWGCWC 2 cut(s) 586, 979
BbvI GCAGC 3 cut(s) 175, 740, 914
BccI CCATC 2 cut(s) 380, 648
BceAI ACGGC 2 cut(s) 239, 263
BciT130I CCWGG 1 cut(s) 1013
BcoDI GTCTC 1 cut(s) 360
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 564, 906
BfmI CTRYAG 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 6 cut(s) 85, 170, 181, 189, 729, 903
BlsI GCNGC 6 cut(s) 86, 171, 182, 190, 730, 904
Bme1390I CCNGG 1 cut(s) 1013
BmeRI GACNNNNNGTC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 1013
BpmI CTGGAG 2 cut(s) 162, 840
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 967, 1012
BsaWI WCCGGW 3 cut(s) 92, 102, 358
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 179, 242, 285, 440
Bse118I RCCGGY 1 cut(s) 102
BseBI CCWGG 1 cut(s) 1013
BseDI CCNNGG 2 cut(s) 967, 1012
BseGI GGATG 5 cut(s) 77, 335, 391, 691, 715
BseLI CCNNNNNNNGG 5 cut(s) 140, 179, 242, 285, 440
BseSI GKGCMC 1 cut(s) 586
BseX3I CGGCCG 2 cut(s) 82, 287
BseXI GCAGC 3 cut(s) 175, 740, 914
Bsh1285I CGRYCG 2 cut(s) 85, 290
BshFI GGCC 4 cut(s) 84, 235, 289, 299
BshTI ACCGGT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 85, 290
BsiHKAI GWGCWC 2 cut(s) 586, 979
BsiSI CCGG 7 cut(s) 81, 93, 103, 203, 232, 286, 359
BslI CCNNNNNNNGG 5 cut(s) 140, 179, 242, 285, 440
BsmAI GTCTC 1 cut(s) 360
BsnI GGCC 4 cut(s) 84, 235, 289, 299
Bsp1286I GDGCHC 2 cut(s) 586, 979
Bsp143I GATC 1 cut(s) 542
BspACI CCGC 5 cut(s) 85, 170, 180, 183, 200
BspANI GGCC 4 cut(s) 84, 235, 289, 299
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 967, 1012
BssMI GATC 1 cut(s) 542
BssNI GRCGYC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 1 cut(s) 1013
Bst4CI ACNGT 2 cut(s) 124, 315
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 6, 212
BstF5I GGATG 5 cut(s) 77, 335, 391, 691, 715
BstKTI GATC 1 cut(s) 545
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 1 cut(s) 542
BstMCI CGRYCG 2 cut(s) 85, 290
BstMWI GCNNNNNNNGC 3 cut(s) 47, 232, 305
BstNI CCWGG 1 cut(s) 1013
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 1011
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 3 cut(s) 175, 740, 914
BstXI CCANNNNNNTGG 1 cut(s) 26
BstZI CGGCCG 2 cut(s) 82, 287
BsuRI GGCC 4 cut(s) 84, 235, 289, 299
BtsCI GGATG 5 cut(s) 77, 335, 391, 691, 715
Cac8I GCNNGC 2 cut(s) 6, 212
CciI TCATGA 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 102
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 519
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 4 cut(s) 62, 352, 775, 788
CviQI GTAC 1 cut(s) 519
DpnI GATC 1 cut(s) 544
DpnII GATC 1 cut(s) 542
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 4 cut(s) 82, 233, 287, 297
EagI CGGCCG 2 cut(s) 82, 287
Eam1105I GACNNNNNGTC 1 cut(s) 567
EciI GGCGGA 2 cut(s) 189, 198
EclXI CGGCCG 2 cut(s) 82, 287
Eco130I CCWWGG 1 cut(s) 967
Eco52I CGGCCG 2 cut(s) 82, 287
Eco57I CTGAAG 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 1011
EcoT14I CCWWGG 1 cut(s) 967
EcoT22I ATGCAT 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 4 cut(s) 65, 355, 778, 791
FatI CATG 4 cut(s) 61, 351, 774, 787
Fnu4HI GCNGC 6 cut(s) 85, 170, 181, 189, 729, 903
FokI GGATG 5 cut(s) 64, 322, 398, 698, 722
Fsp4HI GCNGC 6 cut(s) 85, 170, 181, 189, 729, 903
FspBI CTAG 2 cut(s) 564, 906
GluI GCNGC 6 cut(s) 85, 170, 181, 189, 729, 903
GsuI CTGGAG 2 cut(s) 162, 840
HaeIII GGCC 4 cut(s) 84, 235, 289, 299
HapII CCGG 7 cut(s) 81, 93, 103, 203, 232, 286, 359
HgaI GACGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 4 cut(s) 65, 355, 778, 791
HinfI GANTC 6 cut(s) 115, 332, 414, 455, 514, 573
HpaII CCGG 7 cut(s) 81, 93, 103, 203, 232, 286, 359
HphI GGTGA 2 cut(s) 401, 571
Hpy166II GTNNAC 2 cut(s) 584, 958
Hpy188I TCNGA 3 cut(s) 319, 376, 553
Hpy188III TCNNGA 4 cut(s) 141, 163, 535, 788
Hpy8I GTNNAC 2 cut(s) 584, 958
Hpy99I CGWCG 2 cut(s) 161, 225
HpyAV CCTTC 2 cut(s) 351, 497
HpyCH4III ACNGT 2 cut(s) 124, 315
HpyCH4V TGCA 5 cut(s) 351, 584, 752, 765, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 232, 305
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 4 cut(s) 65, 355, 778, 791
Kzo9I GATC 1 cut(s) 542
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 3 cut(s) 175, 740, 914
MaeI CTAG 2 cut(s) 564, 906
MaeIII GTNAC 3 cut(s) 29, 559, 850
MalI GATC 1 cut(s) 544
MboI GATC 1 cut(s) 542
MboII GAAGA 6 cut(s) 341, 476, 497, 619, 876, 883
MfeI CAATTG 2 cut(s) 459, 1045
MhlI GDGCHC 2 cut(s) 586, 979
MluCI AATT 6 cut(s) 257, 302, 459, 739, 783, 1045
MlyI GAGTC 2 cut(s) 109, 423
MnlI CCTC 5 cut(s) 140, 376, 550, 616, 1031
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 3 cut(s) 714, 825, 990
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 7 cut(s) 81, 93, 103, 203, 232, 286, 359
MspR9I CCNGG 1 cut(s) 1013
MunI CAATTG 2 cut(s) 459, 1045
MvaI CCWGG 1 cut(s) 1013
MwoI GCNNNNNNNGC 3 cut(s) 47, 232, 305
NdeII GATC 1 cut(s) 542
NlaIII CATG 4 cut(s) 65, 355, 778, 791
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 1 cut(s) 355
PagI TCATGA 1 cut(s) 787
PfeI GAWTC 4 cut(s) 332, 455, 514, 573
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 6 cut(s) 86, 171, 182, 190, 730, 904
PleI GAGTC 2 cut(s) 109, 422
PpsI GAGTC 2 cut(s) 109, 422
PsiI TTATAA 1 cut(s) 1008
Psp6I CCWGG 1 cut(s) 1011
PspGI CCWGG 1 cut(s) 1011
PspN4I GGNNCC 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 511, 543
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 3 cut(s) 714, 825, 990
SatI GCNGC 6 cut(s) 85, 170, 181, 189, 729, 903
Sau3AI GATC 1 cut(s) 542
SchI GAGTC 2 cut(s) 109, 423
ScrFI CCNGG 1 cut(s) 1013
SduI GDGCHC 2 cut(s) 586, 979
SetI ASST 9 cut(s) 56, 190, 247, 445, 561, 764, 772, 907, 1025
SfcI CTRYAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 6 cut(s) 257, 302, 459, 739, 783, 1045
SsiI CCGC 5 cut(s) 85, 170, 180, 183, 200
SspI AATATT 1 cut(s) 924
SspMI CTAG 2 cut(s) 564, 906
StyD4I CCNGG 1 cut(s) 1011
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 2 cut(s) 124, 315
TaqI TCGA 6 cut(s) 113, 220, 274, 417, 571, 800
TasI AATT 6 cut(s) 257, 302, 459, 739, 783, 1045
TauI GCSGC 3 cut(s) 87, 172, 183
TfiI GAWTC 4 cut(s) 332, 455, 514, 573
Tru1I TTAA 3 cut(s) 714, 825, 990
Tru9I TTAA 3 cut(s) 714, 825, 990
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 188, 728, 902
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 9 cut(s) 324, 342, 410, 498, 690, 776, 824, 884, 890
TspGWI ACGGA 2 cut(s) 98, 619
VneI GTGCAC 1 cut(s) 582
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XspI CTAG 2 cut(s) 564, 906
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.