Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000560.1

Orthogroup ID

OG0004837

Physical Location & Seq

Genomic Coordinates Reverse (-)

48184 .. 49784

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000560.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgatgatgaagtcaaatagacatatgcccaatgcagcaaaagatttaacagaagcttttcataaagagaacttacaaatcagaaaagttccttcaatgtttggtggtgctcacaatattggtttcgactatagagactgctataatcatttaaggaacgtgaggcacaaagagttggaatatggagatgcacaatcagtcctcaattactttaggaaaaagcaagtagagaatccacaattcttttatgctatccagtgtgatgaagatgcatatcggacaaacaagtatgacatgccatttgccccattcactggagtaaaccatcacttccaatccatacaatttggatgtgcccttttacaagatgagacagaggcaacatttctatggttatttgagacgtggcttgaagctatgggacgtagacattcgttatgtgttatcactgaccaagatttggcaatgaaaggagcaattgctaagatttttcacaatactcgtcatcgcctttgcatttggcatataaagaaaaagtttggtgaaaagttgtcacatgtatattataaaaagtccaacttcaagactggcatgaaaaagtgtatatgggcaacatacagaacagaggaatttgaagagcaatggaagaagttgattgaggagcatgaattagaacaaaatgaatggctacaacaactttatgaaattcgtgaacattggattcctgtatataattgtagcacattttttgccggaatgaatacaactgggcgtagtgaaggcactaatgcattttttgatgactttgttacatcaacgaccaatttgagagaatttgttgtcaagtatgaacaagccttacagaggattattacaagggaaagtagcaaagattttatatcggagcataaatatcgtattgtgaatgatgatgactttcttttgaaacatgcagcacaggtgtacactagaaatatatttgaaaaattcaagagtgaatgggttagagtcaaacggctcagagttgaagaaatgggttccgatgatcagtttcatagatactcaatgatgaagaaaactgacaactcacaagagttttttgtggagctgaatttacaaacacatgaagatgaggcctacaaaatgttcatggatggtttagatgaactgtcaaaaaaaaattcagaagttaataaggtatcaaaagaagatgttgtggagtctcaagataatgttttccaagatgaagcagatcaacatacgagtaagatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

424

Amino Acids

50.69

Weight (kDa)

6.27

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22662 FvH4_1g25683 FvH4_2g07931 FvH4_2g15201 FvH4_2g18171 FvH4_3g27581 FvH4_4g15802 FvH4_5g19941 FvH4_5g31091
prunus_persica	Prupe.2G091000_v2.0.a1 Prupe.3G154400_v2.0.a1 Prupe.4G246500_v2.0.a1 Prupe.5G036100_v2.0.a1 Prupe.6G155600_v2.0.a1
pyrus_communis	pycom04g09660
rosa_multiflora	Rmu_sc0000560.1_g000009 Rmu_sc0000904.1_g000004 Rmu_sc0001545.1_g000022 Rmu_sc0001889.1_g000029 Rmu_sc0004268.1_g000012 Rmu_sc0004950.1_g000005 Rmu_sc0005030.1_g000001 Rmu_sc0005030.1_g000002
rosa_rugosa	Rorug02G0462700 Rorug03G0258300 Rorug03G0294500 Rorug05G0293500
rosa_wichuraiana	Rw4G005940 Rw5G008400 Rw5G027240 Rw5G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB7I	CCANNNNNTGG	2 cut(s)	314, 460
AccI	GTMKAC	1 cut(s)	427
AcsI	RAATTY	6 cut(s)	629, 705, 833, 986, 1111, 1180
AfaI	GTAC	1 cut(s)	965
AfiI	CCNNNNNNNGG	3 cut(s)	314, 460, 864
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	8 cut(s)	96, 413, 583, 635, 946, 983, 991, 1028
AjiI	CACGTC	1 cut(s)	405
AluBI	AGCT	3 cut(s)	56, 416, 1108
AluI	AGCT	3 cut(s)	56, 416, 1108
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	4 cut(s)	129, 365, 395, 1227
AoxI	GGCC	1 cut(s)	1134
ApeKI	GCWGC	2 cut(s)	35, 953
ApoI	RAATTY	6 cut(s)	629, 705, 833, 986, 1111, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	47, 965
BccI	CCATC	2 cut(s)	333, 1148
BceAI	ACGGC	1 cut(s)	1031
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BclI	TGATCA	1 cut(s)	1045
BcoDI	GTCTC	4 cut(s)	129, 365, 395, 1227
BfaI	CTAG	1 cut(s)	969
BfmI	CTRYAG	1 cut(s)	130
BglII	AGATCT	1 cut(s)	1269
BisI	GCNGC	2 cut(s)	36, 954
BlsI	GCNGC	2 cut(s)	37, 955
BmgBI	CACGTC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	1039
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	178, 259
BmuI	ACTGGG	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	1209
BsaBI	GATNNNNATC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 460, 864
Bse1I	ACTGG	4 cut(s)	256, 319, 592, 772
Bse3DI	GCAATG	2 cut(s)	471, 647
Bse8I	GATNNNNATC	1 cut(s)	273
BseGI	GGATG	2 cut(s)	356, 1159
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	314, 460, 864
BseMI	GCAATG	2 cut(s)	471, 647
BseMII	CTCAG	1 cut(s)	1033
BseNI	ACTGG	4 cut(s)	256, 319, 592, 772
BseRI	GAGGAG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	47, 965
BshFI	GGCC	1 cut(s)	1136
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	314, 460, 864
BsmAI	GTCTC	4 cut(s)	129, 365, 395, 1227
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	1136
Bsp1286I	GDGCHC	2 cut(s)	112, 358
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	3 cut(s)	1045, 1252, 1269
BspANI	GGCC	1 cut(s)	1136
BspCNI	CTCAG	1 cut(s)	1032
BspLI	GGNNCC	1 cut(s)	1039
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	2 cut(s)	471, 647
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	4 cut(s)	256, 319, 592, 772
BssMI	GATC	3 cut(s)	1045, 1252, 1269
Bst4CI	ACNGT	1 cut(s)	1170
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	963
BstDEI	CTNAG	2 cut(s)	483, 1019
BstENI	CCTNNNNNAGG	1 cut(s)	862
BstF5I	GGATG	2 cut(s)	356, 1159
BstKTI	GATC	3 cut(s)	1048, 1255, 1272
BstMAI	GTCTC	4 cut(s)	129, 365, 395, 1227
BstMBI	GATC	3 cut(s)	1045, 1252, 1269
BstNSI	RCATGY	3 cut(s)	298, 560, 953
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	47, 965
BstX2I	RGATCY	1 cut(s)	1269
BstYI	RGATCY	1 cut(s)	1269
BsuRI	GGCC	1 cut(s)	1136
BtgZI	GCGATG	1 cut(s)	491
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	356, 1159
BtsIMutI	CAGTG	3 cut(s)	263, 312, 447
Csp6I	GTAC	1 cut(s)	964
CviAII	CATG	7 cut(s)	295, 557, 592, 665, 950, 1124, 1150
CviJI	RGCY	8 cut(s)	56, 409, 416, 688, 857, 1018, 1108, 1136
CviKI_1	RGCY	8 cut(s)	56, 409, 416, 688, 857, 1018, 1108, 1136
CviQI	GTAC	1 cut(s)	964
DdeI	CTNAG	2 cut(s)	483, 1019
DpnI	GATC	3 cut(s)	1047, 1254, 1271
DpnII	GATC	3 cut(s)	1045, 1252, 1269
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco147I	AGGCCT	1 cut(s)	1136
EcoNI	CCTNNNNNAGG	1 cut(s)	862
EcoT22I	ATGCAT	2 cut(s)	274, 793
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	7 cut(s)	298, 560, 595, 668, 953, 1127, 1153
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	7 cut(s)	294, 556, 591, 664, 949, 1123, 1149
FauNDI	CATATG	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	36, 954
FokI	GGATG	2 cut(s)	363, 1166
Fsp4HI	GCNGC	2 cut(s)	36, 954
FspBI	CTAG	1 cut(s)	969
GluI	GCNGC	2 cut(s)	36, 954
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	1136
HapII	CCGG	1 cut(s)	753
Hin1II	CATG	7 cut(s)	298, 560, 595, 668, 953, 1127, 1153
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	4 cut(s)	232, 721, 1008, 1220
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	5 cut(s)	322, 428, 713, 964, 966
Hpy188I	TCNGA	7 cut(s)	83, 279, 904, 1022, 1042, 1186, 1274
Hpy188III	TCNNGA	4 cut(s)	583, 710, 991, 1226
Hpy8I	GTNNAC	5 cut(s)	322, 428, 713, 964, 966
HpyAV	CCTTC	2 cut(s)	102, 773
HpyCH4III	ACNGT	1 cut(s)	1170
HpyCH4IV	ACGT	3 cut(s)	159, 404, 424
HpyCH4V	TGCA	6 cut(s)	35, 191, 272, 516, 791, 953
HpyF3I	CTNAG	2 cut(s)	483, 1019
HpySE526I	ACGT	3 cut(s)	159, 404, 424
Hsp92II	CATG	7 cut(s)	298, 560, 595, 668, 953, 1127, 1153
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	3 cut(s)	1045, 1252, 1269
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	4 cut(s)	473, 661, 904, 1105
LpnPI	CCDG	7 cut(s)	269, 300, 573, 738, 753, 766, 944
Lsp1109I	GCAGC	2 cut(s)	47, 965
LweI	GCATC	2 cut(s)	178, 259
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	3 cut(s)	159, 404, 424
MaeIII	GTNAC	2 cut(s)	552, 808
MalI	GATC	3 cut(s)	1047, 1254, 1271
MboI	GATC	3 cut(s)	1045, 1252, 1269
MboII	GAAGA	7 cut(s)	278, 647, 658, 1040, 1084, 1139, 1220
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	1269
MhlI	GDGCHC	2 cut(s)	112, 358
MlyI	GAGTC	2 cut(s)	1017, 1229
MmeI	TCCRAC	2 cut(s)	156, 600
MnlI	CCTC	7 cut(s)	156, 212, 370, 619, 652, 858, 1126
Mph1103I	ATGCAT	2 cut(s)	274, 793
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	3 cut(s)	47, 152, 1191
MslI	CAYNNNNRTG	2 cut(s)	388, 1128
MspI	CCGG	1 cut(s)	753
MunI	CAATTG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	3 cut(s)	1045, 1252, 1269
NlaIII	CATG	7 cut(s)	298, 560, 595, 668, 953, 1127, 1153
NlaIV	GGNNCC	1 cut(s)	1039
NmuCI	GTSAC	1 cut(s)	552
NsiI	ATGCAT	2 cut(s)	274, 793
NspI	RCATGY	3 cut(s)	298, 560, 953
PceI	AGGCCT	1 cut(s)	1136
PciI	ACATGT	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	232, 721
PflMI	CCANNNNNTGG	2 cut(s)	314, 460
PkrI	GCNGC	2 cut(s)	37, 955
PleI	GAGTC	2 cut(s)	1016, 1228
PpsI	GAGTC	2 cut(s)	1016, 1228
PscI	ACATGT	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	1039
PsrI	GAACNNNNNNTAC	2 cut(s)	843, 875
PsuI	RGATCY	1 cut(s)	1269
RsaI	GTAC	1 cut(s)	965
RsaNI	GTAC	1 cut(s)	964
RseI	CAYNNNNRTG	2 cut(s)	388, 1128
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	47, 152, 1191
SatI	GCNGC	2 cut(s)	36, 954
Sau3AI	GATC	3 cut(s)	1045, 1252, 1269
SchI	GAGTC	2 cut(s)	1017, 1229
SduI	GDGCHC	2 cut(s)	112, 358
SetI	ASST	8 cut(s)	58, 162, 407, 418, 427, 963, 1110, 1200
SfaNI	GCATC	2 cut(s)	178, 259
SfcI	CTRYAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	388, 1128
SmlI	CTYRAG	1 cut(s)	1224
SmoI	CTYRAG	1 cut(s)	1224
SseBI	AGGCCT	1 cut(s)	1136
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	1136
TaaI	ACNGT	1 cut(s)	1170
TaiI	ACGT	3 cut(s)	162, 407, 427
TaqI	TCGA	1 cut(s)	126
TatI	WGTACW	1 cut(s)	963
TfiI	GAWTC	2 cut(s)	232, 721
Tru1I	TTAA	3 cut(s)	47, 152, 1191
Tru9I	TTAA	3 cut(s)	47, 152, 1191
TscAI	CASTG	3 cut(s)	263, 319, 454
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	2 cut(s)	35, 953
Tsp45I	GTSAC	1 cut(s)	552
TspRI	CASTG	3 cut(s)	263, 319, 454
Van91I	CCANNNNNTGG	2 cut(s)	314, 460
XagI	CCTNNNNNAGG	1 cut(s)	862
XapI	RAATTY	6 cut(s)	629, 705, 833, 986, 1111, 1180
XceI	RCATGY	3 cut(s)	298, 560, 953
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	969
Zsp2I	ATGCAT	2 cut(s)	274, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.