Rmu_sc0004284.1_g000007

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004284.1
OG0025579
Physical Location & Seq
Forward (+)
44302 .. 44681
380 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
atgtcgttagtgacgtgtcggtttctcattggctcggggtcgcggcgctgtgggacccccctctcgggtcaccacagagaaagtgaagtcagagaagctcatttggccaagtccctgttcttcatccgtataggaaaagcgctggaacaactcaaggtaacagagagcaagacagttgcaatatggcaaaagatggacttggtgttctatacgctgcagcttggtttcttttacatggattttgacctcatttctaagagcattgagaaagcgaaaaagtaa

Protein Analysis

93

Amino Acids

10.67

Weight (kDa)

9.64

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 27 - 92 8.2e-12 26S proteasome subunit RPN7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025579)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004284.1_g000007
rosa_samantha Rh2AG204800 Rh7DG309200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 105
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 64, 65
AflIII ACRYGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 98, 220
AluI AGCT 2 cut(s) 98, 220
Ama87I CYCGRG 2 cut(s) 34, 64
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 214, 217
AspLEI GCGC 2 cut(s) 48, 142
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 2 cut(s) 34, 64
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 107
BbvI GCAGC 2 cut(s) 201, 229
BccI CCATC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 215
BfoI RGCGCY 2 cut(s) 49, 143
BisI GCNGC 3 cut(s) 44, 215, 218
BlsI GCNGC 3 cut(s) 45, 216, 219
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 2 cut(s) 34, 64
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 55, 56
BpuEI CTTGAG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 65
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 64, 65
BseXI GCAGC 2 cut(s) 201, 229
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 34, 64
BslFI GGGAC 2 cut(s) 67, 97
BslI CCNNNNNNNGG 2 cut(s) 64, 65
BsmFI GGGAC 2 cut(s) 67, 97
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 2 cut(s) 34, 64
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 55, 56
BspMAI CTGCAG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 2 cut(s) 49, 143
BstHHI GCGC 2 cut(s) 48, 142
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 215
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 201, 229
BsuRI GGCC 1 cut(s) 107
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 123
CfoI GCGC 2 cut(s) 48, 142
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 1 cut(s) 235
CviJI RGCY 4 cut(s) 33, 98, 107, 220
CviKI_1 RGCY 4 cut(s) 33, 98, 107, 220
DdeI CTNAG 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 34, 64
Eco91I GGTNACC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 68
FaeI CATG 1 cut(s) 238
FaiI YATR 4 cut(s) 131, 184, 210, 236
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 67, 97
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 44, 215, 218
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 44, 215, 218
GlaI GCGC 2 cut(s) 47, 141
GluI GCNGC 3 cut(s) 44, 215, 218
HaeII RGCGCY 2 cut(s) 49, 143
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 2 cut(s) 48, 142
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 2 cut(s) 46, 140
HinP1I GCGC 2 cut(s) 46, 140
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 179, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 2 cut(s) 46, 140
KflI GGGWCCC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 128, 128
Lsp1109I GCAGC 2 cut(s) 201, 229
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 10, 68, 157
MboII GAAGA 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 2 cut(s) 71, 257
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 55, 56
NmuCI GTSAC 2 cut(s) 10, 68
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PkrI GCNGC 3 cut(s) 45, 216, 219
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
PspEI GGTNACC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 55, 56
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 1 cut(s) 219
SatI GCNGC 3 cut(s) 44, 215, 218
Sau96I GGNCC 1 cut(s) 54
SetI ASST 5 cut(s) 17, 100, 159, 222, 249
SfcI CTRYAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 1 cut(s) 43
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 17
TauI GCSGC 1 cut(s) 46
TseFI GTSAC 2 cut(s) 10, 68
TseI GCWGC 2 cut(s) 214, 217
Tsp45I GTSAC 2 cut(s) 10, 68
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.