Rh7DG309200

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0025579
Physical Location & Seq
Forward (+)
36211255 .. 36217315
6061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG309200.1

Sequence Viewer

Length: 360 bp
ATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGGTGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAGATTGCTGATGCTGAAGAAAACCTGGGAGAAAGTGAAGTCAGAGAAGCCCATTTGGCCAAGTCCCTGTTCTTCATCCGTATAGGGAAAGCGCTGGAACAACTCAAGGTAACAGAGAGCAAGACAGTTGCAATAGGGCAAAAGATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAATAGCATTGAGAAAGCGAAAAATAATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGCTTGA

Protein Analysis

119

Amino Acids

13.58

Weight (kDa)

9.4

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 30 - 110 9.3e-18 26S proteasome subunit RPN7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025579)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004284.1_g000007
rosa_samantha Rh2AG204800 Rh7DG309200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 123
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 25, 39
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 253, 256
AspLEI GCGC 2 cut(s) 18, 181
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 58, 346
AvaII GGWCC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 146
BbvI GCAGC 2 cut(s) 240, 268
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 254, 257
BlsI GCNGC 2 cut(s) 255, 258
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 39
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 25, 39
BseMI GCAATG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 240, 268
BshFI GGCC 1 cut(s) 146
BslFI GGGAC 3 cut(s) 43, 55, 136
BslI CCNNNNNNNGG 2 cut(s) 25, 39
BsmFI GGGAC 3 cut(s) 43, 55, 136
BsnI GGCC 1 cut(s) 146
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 46, 214
Bst6I CTCTTC 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 18, 181
BstMWI GCNNNNNNNGC 2 cut(s) 13, 143
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 240, 268
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 162
CfoI GCGC 2 cut(s) 18, 181
Cfr13I GGNCC 1 cut(s) 30
CviAII CATG 2 cut(s) 85, 274
CviJI RGCY 5 cut(s) 52, 73, 137, 146, 259
CviKI_1 RGCY 5 cut(s) 52, 73, 137, 146, 259
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 88, 277
FaiI YATR 5 cut(s) 81, 86, 170, 249, 275
FalI AAGNNNNNCTT 3 cut(s) 221, 253, 340
FaqI GGGAC 3 cut(s) 43, 55, 136
FatI CATG 2 cut(s) 84, 273
Fnu4HI GCNGC 2 cut(s) 254, 257
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 254, 257
GlaI GCGC 2 cut(s) 17, 180
GluI GCNGC 2 cut(s) 254, 257
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 146
HhaI GCGC 2 cut(s) 18, 181
Hin1II CATG 2 cut(s) 88, 277
Hin6I GCGC 2 cut(s) 16, 179
HinP1I GCGC 2 cut(s) 16, 179
HinfI GANTC 2 cut(s) 59, 351
HphI GGTGA 2 cut(s) 58, 346
Hpy188I TCNGA 2 cut(s) 58, 131
HpyCH4III ACNGT 2 cut(s) 46, 214
HpyCH4V TGCA 2 cut(s) 218, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 143
Hsp92II CATG 2 cut(s) 88, 277
HspAI GCGC 2 cut(s) 16, 179
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 98, 125, 167, 167
Lsp1109I GCAGC 2 cut(s) 240, 268
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 5 cut(s) 100, 116, 151, 337, 360
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 2 cut(s) 22, 319
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 42, 296, 321, 325
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 13, 143
NlaIII CATG 2 cut(s) 88, 277
NlaIV GGNNCC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 2 cut(s) 255, 258
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 258
SatI GCNGC 2 cut(s) 254, 257
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 114, 198, 261, 288, 336
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 22, 319
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 46, 214
TaqI TCGA 1 cut(s) 67
TasI AATT 2 cut(s) 22, 319
TfiI GAWTC 1 cut(s) 351
TseI GCWGC 2 cut(s) 253, 256
TspDTI ATGAA 2 cut(s) 101, 151
TspGWI ACGGA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.