Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0025579

Physical Location & Seq

Genomic Coordinates Forward (+)

20680757 .. 20681227

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGATCTTTTCTTGTAGTGCTGGGAGAAAGTGAAGTCAGAGAAGCTCATTTGGCCAAGTCCCTGTTCTTCATCCGTATAGGTGACAAGGAAAAAGCGCTGGAACAACTCAAGGTAACAGAAAGCAAGACAGTTGCAGTAGGGCAAAAGATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAATAATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

92

Amino Acids

10.51

Weight (kDa)

9.47

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	8 - 83	1.1e-19	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025579)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004284.1_g000007
rosa_samantha	Rh2AG204800 Rh7DG309200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	54
AfeI	AGCGCT	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	47, 178
AluI	AGCT	2 cut(s)	47, 178
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	172, 175
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	95, 265
BalI	TGGCCA	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	159, 187
BccI	CCATC	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	101
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	2 cut(s)	173, 176
BlsI	GCNGC	2 cut(s)	174, 177
BpuEI	CTTGAG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	159, 187
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	177
BssMI	GATC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	159, 187
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	3 cut(s)	47, 56, 178
CviKI_1	RGCY	3 cut(s)	47, 56, 178
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47III	AGCGCT	1 cut(s)	99
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	80, 168, 194
FalI	AAGNNNNNCTT	3 cut(s)	140, 172, 259
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	173, 176
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	173, 176
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	173, 176
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	270
HphI	GGTGA	2 cut(s)	95, 265
Hpy188I	TCNGA	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	137, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	8, 77, 86
Lsp1109I	GCAGC	2 cut(s)	159, 187
MaeIII	GTNAC	2 cut(s)	83, 115
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	61, 256, 279
MflI	RGATCY	1 cut(s)	5
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	3 cut(s)	215, 240, 244
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	174, 177
PspFI	CCCAGC	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	5
SatI	GCNGC	2 cut(s)	173, 176
Sau3AI	GATC	1 cut(s)	5
SetI	ASST	6 cut(s)	49, 85, 117, 180, 207, 255
SfcI	CTRYAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	172, 175
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.