Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004288.1

Orthogroup ID

OG0031296

Physical Location & Seq

Genomic Coordinates Reverse (-)

63801 .. 67404

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004288.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgttaagattggctttggtttgtcctcttgatggaccaattcctcttatggcagtcagcttggttgcgaagatgcgagatttctcacctttaatctcgtcagtgttgggtgatgtcagaggggaattcgttgatggctgggttgctcaagtctatctgggttcagactcgatcaggggcacttgggatgtgatggtttgctgggatcaaacaggcgttgatggcgtggagcattgtgctggtgattgggctggatcgggttcggtcttatgcgggggaactgtagtggacacggctgtgttcgtttgtcgtcgtggcttggaggacaaagatgatggagtggttgaccgaacggctagtgtcggcagtggtgcggcgggtggttttggttggaaagatgcgtgtgggctcaatggtaaatcaatggctgcaccaccaagggctcgcgccgattacgattatctgatcaagctcctcctcattggcgacagtggtgttggaaagagttgcctgcttttacgattctctgatggctccttcacaaccagtttcattaccactattggaattgacttcaagataagaaccattgatcttgatggcaaacgaattaagttgcaaatctgggacacagctggtcaggaacggttccggacaatcacgacagcttactatcgaggagccatgggtattttgttggtgtatgatgtaactgatgagtcatcttttaacaacattaggaactggattcgtaacattgaacaacatgcttctgacaatgtcaacaaggtactggtgggaaacaaggctgatatggatgaaagcaaaagggccgtgccagcatctaaaggtcaagctcttgctgatgagtatggtatcaagttctttgaaactagtgcaaagacaaacttgaatgtggaggaggttttcttttcaatagccagggatatcaagcagagacttgcagaatctgatgccaggggcactgagccgcaagcactcaagatgaatgaactaggcaatgaaggtggtcaagcagcacaaaaatcatcgtgctgtggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

354

Amino Acids

38.23

Weight (kDa)

5.11

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031296)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004288.1_g000013 Rmu_sc0006406.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	4 cut(s)	273, 374, 377, 992
AclWI	GGATC	2 cut(s)	213, 262
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	792
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	5 cut(s)	577, 761, 890, 913, 936
AhlI	ACTAGT	1 cut(s)	893
AjnI	CCWGG	2 cut(s)	941, 977
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	60, 472, 635, 668, 857
AluI	AGCT	5 cut(s)	60, 472, 635, 668, 857
Alw26I	GTCTC	1 cut(s)	952
AlwI	GGATC	2 cut(s)	213, 262
AlwNI	CAGNNNCTG	1 cut(s)	971
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	2 cut(s)	428, 1037
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	35, 831
AsuHPI	GGTGA	3 cut(s)	78, 122, 254
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	2 cut(s)	182, 986
BanII	GRGCYC	2 cut(s)	411, 445
BbvI	GCAGC	2 cut(s)	415, 1049
BccI	CCATC	7 cut(s)	26, 128, 187, 215, 329, 524, 593
BceAI	ACGGC	3 cut(s)	309, 369, 818
BciT130I	CCWGG	2 cut(s)	943, 979
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	893
BfaI	CTAG	3 cut(s)	357, 894, 1016
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	4 cut(s)	375, 429, 992, 1038
BlsI	GCNGC	4 cut(s)	376, 430, 993, 1039
Bme1390I	CCNGG	2 cut(s)	943, 979
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 831
BmiI	GGNNCC	3 cut(s)	535, 650, 682
BmrFI	CCNGG	2 cut(s)	943, 979
BmsI	GCATC	4 cut(s)	63, 388, 851, 964
BpuEI	CTTGAG	2 cut(s)	132, 986
BsaJI	CCNNGG	4 cut(s)	437, 684, 942, 978
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	546, 749, 798
Bse3DI	GCAATG	1 cut(s)	1027
BseAI	TCCGGA	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	943, 979
BseDI	CCNNGG	4 cut(s)	437, 684, 942, 978
BseGI	GGATG	2 cut(s)	193, 823
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	3 cut(s)	546, 749, 798
BseRI	GAGGAG	4 cut(s)	464, 467, 693, 935
BseSI	GKGCMC	2 cut(s)	182, 986
BseXI	GCAGC	2 cut(s)	415, 1049
BseYI	CCCAGC	2 cut(s)	138, 201
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	833
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	952
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	4 cut(s)	182, 411, 445, 986
Bsp13I	TCCGGA	1 cut(s)	651
Bsp143I	GATC	5 cut(s)	171, 205, 254, 465, 592
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	4 cut(s)	273, 374, 377, 992
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	1 cut(s)	979
BspEI	TCCGGA	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	535, 650, 682
BspPI	GGATC	2 cut(s)	213, 262
BsrDI	GCAATG	1 cut(s)	1027
BsrI	ACTGG	3 cut(s)	546, 749, 798
BssECI	CCNNGG	4 cut(s)	437, 684, 942, 978
BssMI	GATC	5 cut(s)	171, 205, 254, 465, 592
BssT1I	CCWWGG	2 cut(s)	437, 684
Bst2UI	CCWGG	2 cut(s)	943, 979
Bst4CI	ACNGT	3 cut(s)	283, 491, 648
BstC8I	GCNNGC	4 cut(s)	445, 512, 840, 996
BstDEI	CTNAG	1 cut(s)	987
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	193, 823
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	5 cut(s)	174, 208, 257, 468, 595
BstMAI	GTCTC	1 cut(s)	952
BstMBI	GATC	5 cut(s)	171, 205, 254, 465, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 839
BstNI	CCWGG	2 cut(s)	943, 979
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	2 cut(s)	941, 977
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	2 cut(s)	182, 986
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	415, 1049
BsuRI	GGCC	1 cut(s)	833
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	193, 823
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	4 cut(s)	108, 373, 496, 984
Cac8I	GCNNGC	4 cut(s)	445, 512, 840, 996
CaiI	CAGNNNCTG	1 cut(s)	971
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	35, 831
Csp6I	GTAC	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	2 cut(s)	685, 767
CviQI	GTAC	1 cut(s)	791
DdeI	CTNAG	1 cut(s)	987
DpnI	GATC	5 cut(s)	173, 207, 256, 467, 594
DpnII	GATC	5 cut(s)	171, 205, 254, 465, 592
Eco130I	CCWWGG	2 cut(s)	437, 684
Eco24I	GRGCYC	2 cut(s)	411, 445
Eco32I	GATATC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	941, 977
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	2 cut(s)	437, 684
EcoT38I	GRGCYC	2 cut(s)	411, 445
ErhI	CCWWGG	2 cut(s)	437, 684
FaeI	CATG	2 cut(s)	688, 770
FaiI	YATR	7 cut(s)	50, 271, 686, 705, 768, 815, 873
FalI	AAGNNNNNCTT	3 cut(s)	30, 893, 925
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	684, 766
FauI	CCCGC	2 cut(s)	266, 370
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	375, 429, 992, 1038
FokI	GGATG	2 cut(s)	200, 830
FriOI	GRGCYC	2 cut(s)	411, 445
Fsp4HI	GCNGC	4 cut(s)	375, 429, 992, 1038
FspBI	CTAG	3 cut(s)	357, 894, 1016
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	4 cut(s)	375, 429, 992, 1038
GsaI	CCCAGC	2 cut(s)	142, 205
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	688, 770
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	2 cut(s)	346, 784
HindII	GTYRAC	2 cut(s)	346, 784
HinfI	GANTC	5 cut(s)	167, 522, 719, 748, 968
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	3 cut(s)	78, 122, 254
Hpy166II	GTNNAC	3 cut(s)	289, 346, 784
Hpy188I	TCNGA	6 cut(s)	119, 166, 465, 529, 775, 973
Hpy188III	TCNNGA	7 cut(s)	29, 577, 596, 641, 652, 661, 1003
Hpy8I	GTNNAC	3 cut(s)	289, 346, 784
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	547, 1019
HpyCH4III	ACNGT	3 cut(s)	283, 491, 648
HpyCH4V	TGCA	4 cut(s)	431, 619, 899, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 839
HpyF3I	CTNAG	1 cut(s)	987
Hsp92II	CATG	2 cut(s)	688, 770
HspAI	GCGC	1 cut(s)	447
Kpn2I	TCCGGA	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	171, 205, 254, 465, 592
LmnI	GCTCC	4 cut(s)	229, 477, 539, 680
Lsp1109I	GCAGC	2 cut(s)	415, 1049
LweI	GCATC	4 cut(s)	63, 388, 851, 964
MaeI	CTAG	3 cut(s)	357, 894, 1016
MaeIII	GTNAC	2 cut(s)	709, 752
MalI	GATC	5 cut(s)	173, 207, 256, 467, 594
MboI	GATC	5 cut(s)	171, 205, 254, 465, 592
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	4 cut(s)	182, 411, 445, 986
MluCI	AATT	4 cut(s)	39, 125, 567, 609
MlyI	GAGTC	2 cut(s)	161, 728
MmeI	TCCRAC	2 cut(s)	371, 478
MnlI	CCTC	9 cut(s)	36, 54, 113, 316, 485, 488, 671, 913, 916
MroI	TCCGGA	1 cut(s)	651
MseI	TTAA	4 cut(s)	5, 92, 612, 729
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	2 cut(s)	943, 979
MvaI	CCWGG	2 cut(s)	943, 979
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	222, 839
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	5 cut(s)	171, 205, 254, 465, 592
NlaIII	CATG	2 cut(s)	688, 770
NlaIV	GGNNCC	3 cut(s)	535, 650, 682
NspI	RCATGY	1 cut(s)	770
OliI	CACNNNNGTG	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	522, 748, 968
PflFI	GACNNNGTC	1 cut(s)	779
PkrI	GCNGC	4 cut(s)	376, 430, 993, 1039
PleI	GAGTC	2 cut(s)	161, 727
PpsI	GAGTC	2 cut(s)	161, 727
Psp6I	CCWGG	2 cut(s)	941, 977
PspFI	CCCAGC	2 cut(s)	138, 201
PspGI	CCWGG	2 cut(s)	941, 977
PspN4I	GGNNCC	3 cut(s)	535, 650, 682
PspPI	GGNCC	2 cut(s)	35, 831
PstNI	CAGNNNCTG	1 cut(s)	971
PsyI	GACNNNGTC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	5, 92, 612, 729
SatI	GCNGC	4 cut(s)	375, 429, 992, 1038
Sau3AI	GATC	5 cut(s)	171, 205, 254, 465, 592
Sau96I	GGNCC	2 cut(s)	35, 831
SchI	GAGTC	2 cut(s)	161, 728
ScrFI	CCNGG	2 cut(s)	943, 979
SduI	GDGCHC	4 cut(s)	182, 411, 445, 986
SfaNI	GCATC	4 cut(s)	63, 388, 851, 964
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	147, 1001
SmoI	CTYRAG	2 cut(s)	147, 1001
SpeI	ACTAGT	1 cut(s)	893
Sse9I	AATT	4 cut(s)	39, 125, 567, 609
SsiI	CCGC	4 cut(s)	273, 374, 377, 992
SspMI	CTAG	3 cut(s)	357, 894, 1016
StyD4I	CCNGG	2 cut(s)	941, 977
StyI	CCWWGG	2 cut(s)	437, 684
TaaI	ACNGT	3 cut(s)	283, 491, 648
TaqI	TCGA	2 cut(s)	170, 676
TaqII	GACCGA	2 cut(s)	253, 363
TasI	AATT	4 cut(s)	39, 125, 567, 609
TauI	GCSGC	2 cut(s)	377, 994
TfiI	GAWTC	3 cut(s)	522, 748, 968
Tru1I	TTAA	4 cut(s)	5, 92, 612, 729
Tru9I	TTAA	4 cut(s)	5, 92, 612, 729
TscAI	CASTG	4 cut(s)	108, 373, 496, 991
TseI	GCWGC	2 cut(s)	428, 1037
TspDTI	ATGAA	5 cut(s)	541, 834, 1022, 1026, 1038
TspRI	CASTG	4 cut(s)	108, 373, 496, 991
Tth111I	GACNNNGTC	1 cut(s)	779
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	770
XspI	CTAG	3 cut(s)	357, 894, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.