Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006406.1

Orthogroup ID

OG0031296

Physical Location & Seq

Genomic Coordinates Forward (+)

31768 .. 37855

Gene Structure 6088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006406.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgttaagattggctctggtttgtcctcttgatggaccaattcctcttatggcagtcagcttggttgcgaagatgcgagatttctcacctttaatctcgtcagtgttgggtgatgtcagaggggaattcgttgatggctgggttgctcaagtctatctgggttcagactcgatcaggggcacttgggatgtgatggtttgctgggatcaaacaggcgttgatggcgtggagcattgtgttggtgattgggctggatcgggttcggtcttatgcgggggaactgtagtggacacgactgtgttcgtttgtcgtcgtggcttagaggacgaagatgatggagtggttgaccagacggctagtgtcggcagcggtgcggcgggtggttttggttggaaagatgcgtgtgggctcaatggtaaatcaatggctgcaccaccaagggctcgcgccgattacgattatctgatcaagctcctcctcattggcgacagtggtgttggaaagagttgcctgcttttacgattctctgatggctccttcacaaccagtttcattaccactattggaattgacttcaagataagaaccattgatcttgatggcaaacgaattaagttgcaaatctgggacacagctggtcaggaacggttccggacaatcacgacagacattaggaactggattcgtaacattgaacaacatgcttctgacaatgtcaacaaggtactggtgggaaacaaggctgatatggatgaaagcaaaagggccgtgccagcatctaaaggtcaagctcttgctgatgagtatggtatcaagttctttgaaactagtgcaaagacaaacttgaatgtggaggaggttttcttttcaatagccagggatatcaagcagagacttgcagaatctgatgccaggggcactgagccgcaagcactcaagatgaatgaactaggcaatgaaggtggtcaagcagcacaaaaatcatcagagctcatgtcgccggtgatcctcaaaaccaatggttcaagctcacctccgccgtcggacaacatgcacagcaccgccggacccaaaatctccttcaaccaaaagtccagcaccggcggaattgaaaaggaccgagagacctttgatatcgagcaagaacgcaaagggatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

386

Amino Acids

41.69

Weight (kDa)

5.03

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031296)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004288.1_g000013 Rmu_sc0006406.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	8 cut(s)	273, 369, 374, 377, 926, 1037, 1062, 1104
AclWI	GGATC	3 cut(s)	213, 262, 1000
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	8 cut(s)	577, 695, 824, 847, 870, 1026, 1084, 1112
AhlI	ACTAGT	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	875, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	1064, 1096
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	6 cut(s)	60, 472, 635, 791, 991, 1029
AluI	AGCT	6 cut(s)	60, 472, 635, 791, 991, 1029
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	2 cut(s)	886, 1118
AlwI	GGATC	3 cut(s)	213, 262, 1000
AlwNI	CAGNNNCTG	1 cut(s)	905
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	3 cut(s)	366, 428, 971
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	4 cut(s)	35, 765, 1067, 1117
AsuHPI	GGTGA	5 cut(s)	78, 122, 254, 1015, 1023
AvaII	GGWCC	3 cut(s)	35, 1067, 1117
BaeGI	GKGCMC	2 cut(s)	182, 920
BanII	GRGCYC	3 cut(s)	411, 445, 993
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	378, 415, 983
BccI	CCATC	7 cut(s)	26, 128, 187, 215, 329, 524, 593
BceAI	ACGGC	3 cut(s)	369, 752, 1024
BciT130I	CCWGG	2 cut(s)	877, 913
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	886, 1118
BcuI	ACTAGT	1 cut(s)	827
BfaI	CTAG	3 cut(s)	357, 828, 950
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	5 cut(s)	367, 375, 429, 926, 972
BlsI	GCNGC	5 cut(s)	368, 376, 430, 927, 973
Bme1390I	CCNGG	2 cut(s)	877, 913
Bme18I	GGWCC	3 cut(s)	35, 1067, 1117
BmgT120I	GGNCC	4 cut(s)	35, 765, 1067, 1117
BmiI	GGNNCC	3 cut(s)	535, 650, 1069
BmrFI	CCNGG	2 cut(s)	877, 913
BmsI	GCATC	4 cut(s)	63, 388, 785, 898
BpuEI	CTTGAG	2 cut(s)	132, 920
BsaI	GGTCTC	1 cut(s)	1118
BsaJI	CCNNGG	3 cut(s)	437, 876, 912
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	2 cut(s)	1000, 1100
Bse1I	ACTGG	3 cut(s)	546, 683, 732
Bse3DI	GCAATG	1 cut(s)	961
BseAI	TCCGGA	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	877, 913
BseDI	CCNNGG	3 cut(s)	437, 876, 912
BseGI	GGATG	2 cut(s)	193, 757
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	1 cut(s)	912
BseNI	ACTGG	3 cut(s)	546, 683, 732
BseRI	GAGGAG	3 cut(s)	464, 467, 869
BseSI	GKGCMC	2 cut(s)	182, 920
BseXI	GCAGC	3 cut(s)	378, 415, 983
BseYI	CCCAGC	2 cut(s)	138, 201
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	993
BsiSI	CCGG	4 cut(s)	652, 1001, 1065, 1101
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	886, 1118
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	767
Bso31I	GGTCTC	1 cut(s)	1118
Bsp1286I	GDGCHC	5 cut(s)	182, 411, 445, 920, 993
Bsp13I	TCCGGA	1 cut(s)	651
Bsp143I	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
BspACI	CCGC	8 cut(s)	273, 369, 374, 377, 926, 1037, 1062, 1104
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	1 cut(s)	913
BspEI	TCCGGA	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	535, 650, 1069
BspPI	GGATC	3 cut(s)	213, 262, 1000
BspTNI	GGTCTC	1 cut(s)	1118
BsrDI	GCAATG	1 cut(s)	961
BsrFI	RCCGGY	2 cut(s)	1000, 1100
BsrI	ACTGG	3 cut(s)	546, 683, 732
BssAI	RCCGGY	2 cut(s)	1000, 1100
BssECI	CCNNGG	3 cut(s)	437, 876, 912
BssMI	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	877, 913
Bst4CI	ACNGT	4 cut(s)	283, 298, 491, 648
BstC8I	GCNNGC	4 cut(s)	445, 512, 774, 930
BstDEI	CTNAG	2 cut(s)	319, 921
BstF5I	GGATG	2 cut(s)	193, 757
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	6 cut(s)	174, 208, 257, 468, 595, 1008
BstMAI	GTCTC	2 cut(s)	886, 1118
BstMBI	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 773, 997
BstNI	CCWGG	2 cut(s)	877, 913
BstNSI	RCATGY	2 cut(s)	704, 1054
BstSCI	CCNGG	2 cut(s)	875, 911
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	2 cut(s)	182, 920
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	378, 415, 983
BsuRI	GGCC	1 cut(s)	767
BtsCI	GGATG	2 cut(s)	193, 757
BtsIMutI	CAGTG	3 cut(s)	108, 496, 918
Cac8I	GCNNGC	4 cut(s)	445, 512, 774, 930
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	1 cut(s)	449
Cfr10I	RCCGGY	2 cut(s)	1000, 1100
Cfr13I	GGNCC	4 cut(s)	35, 765, 1067, 1117
Csp6I	GTAC	1 cut(s)	725
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviAII	CATG	3 cut(s)	701, 994, 1051
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	319, 921
DpnI	GATC	6 cut(s)	173, 207, 256, 467, 594, 1007
DpnII	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
EciI	GGCGGA	2 cut(s)	1026, 1119
Ecl136II	GAGCTC	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	3 cut(s)	411, 445, 993
Eco31I	GGTCTC	1 cut(s)	1118
Eco32I	GATATC	2 cut(s)	883, 1135
Eco47I	GGWCC	3 cut(s)	35, 1067, 1117
Eco53kI	GAGCTC	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	991
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	875, 911
EcoRV	GATATC	2 cut(s)	883, 1135
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	3 cut(s)	411, 445, 993
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	3 cut(s)	704, 997, 1054
FaiI	YATR	7 cut(s)	50, 271, 702, 749, 807, 995, 1052
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	700, 993, 1050
FauI	CCCGC	2 cut(s)	266, 370
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	5 cut(s)	367, 375, 429, 926, 972
FokI	GGATG	2 cut(s)	200, 764
FriOI	GRGCYC	3 cut(s)	411, 445, 993
Fsp4HI	GCNGC	5 cut(s)	367, 375, 429, 926, 972
FspBI	CTAG	3 cut(s)	357, 828, 950
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	5 cut(s)	367, 375, 429, 926, 972
GsaI	CCCAGC	2 cut(s)	142, 205
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	4 cut(s)	652, 1001, 1065, 1101
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	704, 997, 1054
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	2 cut(s)	346, 718
HindII	GTYRAC	2 cut(s)	346, 718
HinfI	GANTC	4 cut(s)	167, 522, 682, 902
HpaII	CCGG	4 cut(s)	652, 1001, 1065, 1101
HphI	GGTGA	5 cut(s)	78, 122, 254, 1015, 1023
Hpy166II	GTNNAC	3 cut(s)	289, 346, 718
Hpy188I	TCNGA	8 cut(s)	119, 166, 465, 529, 709, 907, 988, 1045
Hpy188III	TCNNGA	7 cut(s)	29, 577, 596, 641, 652, 661, 937
Hpy8I	GTNNAC	3 cut(s)	289, 346, 718
Hpy99I	CGWCG	2 cut(s)	315, 1045
HpyAV	CCTTC	3 cut(s)	547, 953, 1090
HpyCH4III	ACNGT	4 cut(s)	283, 298, 491, 648
HpyCH4V	TGCA	5 cut(s)	431, 619, 833, 899, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 773, 997
HpyF3I	CTNAG	2 cut(s)	319, 921
Hsp92II	CATG	3 cut(s)	704, 997, 1054
HspAI	GCGC	1 cut(s)	447
Kpn2I	TCCGGA	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
LmnI	GCTCC	3 cut(s)	229, 477, 539
Lsp1109I	GCAGC	3 cut(s)	378, 415, 983
LweI	GCATC	4 cut(s)	63, 388, 785, 898
MaeI	CTAG	3 cut(s)	357, 828, 950
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	6 cut(s)	173, 207, 256, 467, 594, 1007
MboI	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
MboII	GAAGA	2 cut(s)	82, 341
MhlI	GDGCHC	5 cut(s)	182, 411, 445, 920, 993
MluCI	AATT	5 cut(s)	39, 125, 567, 609, 1107
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	3 cut(s)	371, 478, 1023
MroI	TCCGGA	1 cut(s)	651
MseI	TTAA	3 cut(s)	5, 92, 612
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	369, 635
MspI	CCGG	4 cut(s)	652, 1001, 1065, 1101
MspR9I	CCNGG	2 cut(s)	877, 913
MvaI	CCWGG	2 cut(s)	877, 913
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	222, 773, 997
NdeII	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
NlaIII	CATG	3 cut(s)	704, 997, 1054
NlaIV	GGNNCC	3 cut(s)	535, 650, 1069
NspI	RCATGY	2 cut(s)	704, 1054
OliI	CACNNNNGTG	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	522, 682, 902
PflFI	GACNNNGTC	1 cut(s)	713
PkrI	GCNGC	5 cut(s)	368, 376, 430, 927, 973
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	875, 911
PspFI	CCCAGC	2 cut(s)	138, 201
PspGI	CCWGG	2 cut(s)	875, 911
PspN4I	GGNNCC	3 cut(s)	535, 650, 1069
PspPI	GGNCC	4 cut(s)	35, 765, 1067, 1117
PstNI	CAGNNNCTG	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	993
SaqAI	TTAA	3 cut(s)	5, 92, 612
SatI	GCNGC	5 cut(s)	367, 375, 429, 926, 972
Sau3AI	GATC	6 cut(s)	171, 205, 254, 465, 592, 1005
Sau96I	GGNCC	4 cut(s)	35, 765, 1067, 1117
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	877, 913
SduI	GDGCHC	5 cut(s)	182, 411, 445, 920, 993
SfaNI	GCATC	4 cut(s)	63, 388, 785, 898
SfcI	CTRYAG	1 cut(s)	282
SgrAI	CRCCGGYG	2 cut(s)	1000, 1100
SinI	GGWCC	3 cut(s)	35, 1067, 1117
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	147, 935
SmoI	CTYRAG	2 cut(s)	147, 935
SpeI	ACTAGT	1 cut(s)	827
Sse9I	AATT	5 cut(s)	39, 125, 567, 609, 1107
SsiI	CCGC	8 cut(s)	273, 369, 374, 377, 926, 1037, 1062, 1104
SspMI	CTAG	3 cut(s)	357, 828, 950
SstI	GAGCTC	1 cut(s)	993
StyD4I	CCNGG	2 cut(s)	875, 911
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	283, 298, 491, 648
TaqI	TCGA	2 cut(s)	170, 1137
TaqII	GACCGA	2 cut(s)	253, 1134
TasI	AATT	5 cut(s)	39, 125, 567, 609, 1107
TauI	GCSGC	2 cut(s)	377, 928
TfiI	GAWTC	3 cut(s)	522, 682, 902
Tru1I	TTAA	3 cut(s)	5, 92, 612
Tru9I	TTAA	3 cut(s)	5, 92, 612
TscAI	CASTG	3 cut(s)	108, 496, 925
TseI	GCWGC	3 cut(s)	366, 428, 971
TspDTI	ATGAA	5 cut(s)	541, 768, 956, 960, 972
TspRI	CASTG	3 cut(s)	108, 496, 925
Tth111I	GACNNNGTC	1 cut(s)	713
VpaK11BI	GGWCC	3 cut(s)	35, 1067, 1117
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	704, 1054
XspI	CTAG	3 cut(s)	357, 828, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.