Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004350.1

Orthogroup ID

OG0031301

Physical Location & Seq

Genomic Coordinates Reverse (-)

112 .. 876

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggccaccgcgagagtgcttgccgtctccaacagttcgtgcctgctgaccaagacgacgtcgttcttggcgaagcagaggccttacaggaacaatctccgcttcactactagaagagacgcggcagcgccgtcattgtcgtcgtgggggaggtccttaacttgcagggctatctacaaccccgaggttcagatcaaggaggaaggcctccccgaaaccctagactaccgcgtcttcctcgttgaccactccggccagaaggtttcaccttggcatgatatacctctgcggtcgggcgatggtgcattccactttattgttgagatacccaaagaatcgagtgcaaagatggaggttgctaccgatgagccaaacactcccattaagcaggatacaaagaaaggaaaacttcgttactacccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

9.48

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031301)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004350.1_g000001
rosa_samantha	Rh6BG170900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AatII	GACGTC	1 cut(s)	62
AccII	CGCG	3 cut(s)	11, 122, 231
AciI	CCGC	5 cut(s)	9, 100, 122, 229, 289
AcoI	YGGCCR	2 cut(s)	3, 253
AcyI	GRCGYC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	31, 111
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	4 cut(s)	3, 80, 205, 253
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	293, 343
BceAI	ACGGC	2 cut(s)	8, 115
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	31, 111
BfaI	CTAG	2 cut(s)	111, 221
BfoI	RGCGCY	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	183, 269
BseDI	CCNNGG	2 cut(s)	183, 269
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	3 cut(s)	11, 122, 231
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	5, 82, 207, 255
BsiEI	CGRYCG	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	31, 111
BsmBI	CGTCTC	2 cut(s)	31, 111
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	5, 82, 207, 255
BsoBI	CYCGRG	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	5 cut(s)	9, 100, 122, 229, 289
BspANI	GGCC	4 cut(s)	5, 82, 207, 255
BspFNI	CGCG	3 cut(s)	11, 122, 231
BssECI	CCNNGG	2 cut(s)	183, 269
BssMI	GATC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	21, 44
BstFNI	CGCG	3 cut(s)	11, 122, 231
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	2 cut(s)	31, 111
BstMBI	GATC	1 cut(s)	192
BstMCI	CGRYCG	1 cut(s)	293
BstUI	CGCG	3 cut(s)	11, 122, 231
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	5, 82, 207, 255
BtgZI	GCGATG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	21, 44
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	2 cut(s)	128, 220
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	6 cut(s)	5, 82, 170, 207, 255, 370
CviKI_1	RGCY	6 cut(s)	5, 82, 170, 207, 255, 370
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	3, 253
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	2 cut(s)	82, 207
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	2 cut(s)	31, 111
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	276, 281
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	123, 126
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	2 cut(s)	111, 221
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	123, 126
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	5, 82, 207, 255
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	2 cut(s)	128, 220
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	61, 64, 145
HpyAV	CCTTC	2 cut(s)	197, 253
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	165, 305, 344
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	6 cut(s)	56, 73, 151, 265, 269, 374
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	111, 221
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	126, 226
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	72, 144, 178, 193, 218, 248, 294, 346
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	158, 384
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	3 cut(s)	11, 122, 231
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	278
PceI	AGGCCT	2 cut(s)	82, 207
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	124, 127
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	158, 384
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	153
SetI	ASST	7 cut(s)	62, 155, 189, 264, 271, 286, 357
SinI	GGWCC	1 cut(s)	153
SseBI	AGGCCT	2 cut(s)	82, 207
SsiI	CCGC	5 cut(s)	9, 100, 122, 229, 289
SspMI	CTAG	2 cut(s)	111, 221
StuI	AGGCCT	2 cut(s)	82, 207
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	338
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	158, 384
Tru9I	TTAA	2 cut(s)	158, 384
TseI	GCWGC	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	153
XspI	CTAG	2 cut(s)	111, 221
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.