Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0031301

Physical Location & Seq

Genomic Coordinates Forward (+)

28187310 .. 28191401

Gene Structure 4092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG170900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCACCGCGAGAGTGCTCGCCGTCTCCAACAGTTCGTGCCTGCTGACCAAGACGACGTCGTTCTTGGCGAAGCAGAGGCCGTACAGGAACAATCTCCGCTTCACTACTAGAAGAGACGCGGCAGCGCCGTCATTGTCGTCGCGGAGGAGGTCCTTAACTTGCAGGGCTATCTACAACCCCGAGGTTCAGATCAAGGAGGAAGGCCTCCCCGAAACCCTAGACTACCGCGTCTTCCTCGTTGACCGCTCCGGCCAGAAGGTTTCACCTTGGCATGATATACCTCTGCGCTCGGGCGATGGTGCATTCCACTTTATTGTTGAGATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCAAACACTCCCATTAAGCAGGATACAAAGAAAGGAAAACTTCGTTACTACCCGTACAATATAAACTGGAATTATGGATTGCTTCCACAAACATGGGAAGACCCATCCCTTGCCAACTCCGAAGTGGATGGAGCATTTGGTGATAATGATCCAGGTATGTTGACTTTTCTATTTTCTTTTGTTTATGTGTCACCGGAAAAAGGTAAAATAAAGACTTTCATTTTTGCTACACTTTGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

203

Amino Acids

22.95

Weight (kDa)

9.1

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	105 - 174	1.1e-08	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0031301)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004350.1_g000001
rosa_samantha	Rh6BG170900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AatII	GACGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	4 cut(s)	11, 122, 145, 231
AciI	CCGC	6 cut(s)	9, 100, 122, 145, 229, 247
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	2 cut(s)	3, 253
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	2 cut(s)	86, 425
AfiI	CCNNNNNNNGG	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	520
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	31, 111
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	2 cut(s)	182, 292
AoxI	GGCC	4 cut(s)	3, 80, 205, 253
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	130, 291
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	258, 521, 552
AvaI	CYCGRG	2 cut(s)	182, 292
AvaII	GGWCC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	226, 474
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	4 cut(s)	293, 343, 481, 491
BceAI	ACGGC	3 cut(s)	8, 67, 115
BciT130I	CCWGG	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	31, 111
BfaI	CTAG	2 cut(s)	111, 221
BfoI	RGCGCY	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	2 cut(s)	182, 292
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	226, 474
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	183, 269
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	183, 269
BseGI	GGATG	2 cut(s)	473, 502
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	4 cut(s)	11, 122, 145, 231
BshFI	GGCC	4 cut(s)	5, 82, 207, 255
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	182, 292
BsiSI	CCGG	2 cut(s)	252, 563
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	31, 111
BsmBI	CGTCTC	2 cut(s)	31, 111
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	5, 82, 207, 255
BsoBI	CYCGRG	2 cut(s)	182, 292
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	192, 517
BspACI	CCGC	6 cut(s)	9, 100, 122, 145, 229, 247
BspANI	GGCC	4 cut(s)	5, 82, 207, 255
BspFNI	CGCG	4 cut(s)	11, 122, 145, 231
BspPI	GGATC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	183, 269
BssMI	GATC	2 cut(s)	192, 517
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	21, 44
BstF5I	GGATG	2 cut(s)	473, 502
BstFNI	CGCG	4 cut(s)	11, 122, 145, 231
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	130, 291
BstKTI	GATC	2 cut(s)	195, 520
BstMAI	GTCTC	2 cut(s)	31, 111
BstMBI	GATC	2 cut(s)	192, 517
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	520
BstUI	CGCG	4 cut(s)	11, 122, 145, 231
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	226, 474
BstXI	CCANNNNNNTGG	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	5, 82, 207, 255
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	473, 502
Cac8I	GCNNGC	2 cut(s)	21, 44
CfoI	GCGC	2 cut(s)	130, 291
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	2 cut(s)	128, 220
Csp6I	GTAC	2 cut(s)	85, 424
CviAII	CATG	2 cut(s)	275, 462
CviJI	RGCY	6 cut(s)	5, 82, 170, 207, 255, 370
CviKI_1	RGCY	6 cut(s)	5, 82, 170, 207, 255, 370
CviQI	GTAC	2 cut(s)	85, 424
DpnI	GATC	2 cut(s)	194, 519
DpnII	GATC	2 cut(s)	192, 517
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	3, 253
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	182, 292
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	2 cut(s)	31, 111
FaeI	CATG	2 cut(s)	278, 465
FaiI	YATR	7 cut(s)	276, 281, 431, 444, 463, 527, 555
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	2 cut(s)	274, 461
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	2 cut(s)	460, 509
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	2 cut(s)	111, 221
GlaI	GCGC	2 cut(s)	129, 290
GluI	GCNGC	2 cut(s)	123, 126
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	5, 82, 207, 255
HapII	CCGG	2 cut(s)	252, 563
HgaI	GACGC	2 cut(s)	128, 220
HhaI	GCGC	2 cut(s)	130, 291
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	278, 465
Hin6I	GCGC	2 cut(s)	128, 289
HinP1I	GCGC	2 cut(s)	128, 289
HincII	GTYRAC	2 cut(s)	244, 531
HindII	GTYRAC	2 cut(s)	244, 531
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	2 cut(s)	252, 563
HphI	GGTGA	3 cut(s)	258, 521, 552
Hpy166II	GTNNAC	2 cut(s)	244, 531
Hpy188I	TCNGA	2 cut(s)	192, 490
Hpy8I	GTNNAC	2 cut(s)	244, 531
Hpy99I	CGWCG	3 cut(s)	61, 64, 145
HpyAV	CCTTC	2 cut(s)	197, 253
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	165, 305, 344
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	278, 465
HspAI	GCGC	2 cut(s)	128, 289
Kzo9I	GATC	2 cut(s)	192, 517
LmnI	GCTCC	2 cut(s)	254, 500
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	111, 221
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	413, 558
MalI	GATC	2 cut(s)	194, 519
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	2 cut(s)	192, 517
MboII	GAAGA	3 cut(s)	126, 226, 479
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	439
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	9 cut(s)	72, 141, 144, 178, 193, 218, 248, 294, 346
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	158, 384
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	252, 563
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	4 cut(s)	11, 122, 145, 231
NdeII	GATC	2 cut(s)	192, 517
NlaIII	CATG	2 cut(s)	278, 465
NmuCI	GTSAC	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	124, 127
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	2 cut(s)	86, 425
RsaNI	GTAC	2 cut(s)	85, 424
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	158, 384
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	2 cut(s)	192, 517
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	62, 155, 189, 264, 271, 286, 357, 526, 574
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	1 cut(s)	439
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	6 cut(s)	9, 100, 122, 145, 229, 247
SspMI	CTAG	2 cut(s)	111, 221
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	439
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	158, 384
Tru9I	TTAA	2 cut(s)	158, 384
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	111, 221
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.