Rmu_sc0004350.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004350.1
OG0023026
Physical Location & Seq
Reverse (-)
47942 .. 48881
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004350.1_g000012.1.cds

Sequence Viewer

Length: 435 bp
atgagacgccacatggataaatcgctccgatcggaatacatagcaatcaaagatgctagagaattatggattgtgctagaagagcgttttggtaatgtccatgattccgtcctccctgacttgaaggttcaatggagtaatctacgattcgccgactacaagtccgtcactgaatataattcagaagctctacacctcaaaaccatgttggggttctgtggacaacccgtcacagaatcaagtaagcattggttcaagcaatgcaatgcaagcaatcaattagctgcacaatacaaggcatatagggacctgagagagcaagaagtctatcttgctgaagaaggagatgatggtgatgacaatgatgtcaacctcacaatagcggacttcaaatctgacaaggaattgcataaggatgctgcagattttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

144

Amino Acids

16.78

Weight (kDa)

5.0

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023026)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004071.1_g000007 Rmu_sc0004350.1_g000012 Rmu_sc0011292.1_g000003 Rmu_ssc0000295.1_g000049

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AciI CCGC 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 4 cut(s) 124, 131, 256, 391
AhdI GACNNNNNGTC 2 cut(s) 160, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 188, 284
AluI AGCT 2 cut(s) 188, 284
ApeKI GCWGC 2 cut(s) 284, 419
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 271, 406
BccI CCATC 1 cut(s) 344
BfaI CTAG 2 cut(s) 57, 77
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 2 cut(s) 285, 420
BlsI GCNGC 2 cut(s) 286, 421
Bme18I GGWCC 1 cut(s) 307
BmeRI GACNNNNNGTC 2 cut(s) 160, 227
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 308
BmsI GCATC 2 cut(s) 43, 406
BsaHI GRCGYC 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 266, 271
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 2 cut(s) 266, 271
BseMII CTCAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 271, 406
BsgI GTGCAG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 383
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 424
BspQI GCTCTTC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 266, 271
BssMI GATC 1 cut(s) 29
BssNI GRCGYC 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 82, 270
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 271, 406
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 15
CviAII CATG 3 cut(s) 13, 101, 205
CviJI RGCY 2 cut(s) 188, 284
CviKI_1 RGCY 2 cut(s) 188, 284
DdeI CTNAG 1 cut(s) 311
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DrdI GACNNNNNNGTC 1 cut(s) 365
DriI GACNNNNNGTC 2 cut(s) 160, 227
DseDI GACNNNNNNGTC 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 75
Eam1105I GACNNNNNGTC 2 cut(s) 160, 227
EarI CTCTTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 307
FaeI CATG 3 cut(s) 16, 104, 208
FaiI YATR 9 cut(s) 14, 41, 67, 102, 177, 206, 301, 303, 411
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 12, 100, 204
Fnu4HI GCNGC 2 cut(s) 285, 420
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 2 cut(s) 285, 420
FspBI CTAG 2 cut(s) 57, 77
GluI GCNGC 2 cut(s) 285, 420
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 3 cut(s) 16, 104, 208
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 104, 147, 236
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 221, 370
Hpy188I TCNGA 4 cut(s) 29, 34, 184, 397
Hpy8I GTNNAC 2 cut(s) 221, 370
HpyAV CCTTC 2 cut(s) 118, 335
HpyCH4V TGCA 5 cut(s) 264, 269, 287, 409, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 270
HpyF3I CTNAG 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 3 cut(s) 16, 104, 208
Kzo9I GATC 1 cut(s) 29
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 129, 323
Lsp1109I GCAGC 2 cut(s) 271, 406
LweI GCATC 2 cut(s) 43, 406
MaeI CTAG 2 cut(s) 57, 77
MaeIII GTNAC 2 cut(s) 166, 229
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 92, 350
MluCI AATT 4 cut(s) 62, 178, 278, 404
MnlI CCTC 3 cut(s) 122, 206, 383
MslI CAYNNNNRTG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 82, 270
NdeII GATC 1 cut(s) 29
NlaIII CATG 3 cut(s) 16, 104, 208
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 166, 229
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 104, 147, 236
PkrI GCNGC 2 cut(s) 286, 421
Ple19I CGATCG 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PstI CTGCAG 1 cut(s) 424
PvuI CGATCG 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 2 cut(s) 285, 420
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 307
SetI ASST 6 cut(s) 129, 190, 198, 286, 312, 375
SfaNI GCATC 2 cut(s) 43, 406
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 4 cut(s) 62, 178, 278, 404
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 57, 77
TasI AATT 4 cut(s) 62, 178, 278, 404
TfiI GAWTC 3 cut(s) 104, 147, 236
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 166, 229
TseI GCWGC 2 cut(s) 284, 419
Tsp45I GTSAC 2 cut(s) 166, 229
TspGWI ACGGA 2 cut(s) 97, 154
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 307
XspI CTAG 2 cut(s) 57, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.