Rmu_sc0011292.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011292.1
OG0023026
Physical Location & Seq
Forward (+)
3585 .. 4501
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011292.1_g000003.1.cds

Sequence Viewer

Length: 501 bp
atgcgacgccatatggacaaggcactcagattggagtatatgtcaatcaagaatgcaagagagctatgggtagcactagaagagcgctttggcaatgttcaagattccctcctccctgacttaaaggttcaatggaacaacctgtgctttgctgatttcaagtctgtaactgaatataattcagaagctcttcgcatacagtccatgttgaggttttatggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattgtggcaagcgaggaactagctgaaagatacagggcatatagggacctgagagagcaagaagtgtactttgcagaagaagaagaagatggtggagatgtcaatctcaccatagaggacttcaaagttgaagatgaagtgcacaaggatgcagcagactttgatttgattagtccttttattttttccaagaacttttgtaatggcaatttgccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

166

Amino Acids

19.43

Weight (kDa)

4.56

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023026)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004071.1_g000007 Rmu_sc0004350.1_g000012 Rmu_sc0011292.1_g000003 Rmu_ssc0000295.1_g000049

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 350
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 5 cut(s) 101, 131, 160, 406, 413
AhdI GACNNNNNGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 64, 188, 244, 305
AluI AGCT 4 cut(s) 64, 188, 244, 305
Alw21I GWGCWC 1 cut(s) 426
Alw44I GTGCAC 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 434
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 446
BccI CCATC 1 cut(s) 365
BfaI CTAG 2 cut(s) 77, 302
BfoI RGCGCY 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 384
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 40, 323
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 426
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 39, 324
BspLI GGNNCC 1 cut(s) 329
BspQI GCTCTTC 2 cut(s) 75, 195
BsrDI GCAATG 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 26, 332, 498
BstF5I GGATG 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 64, 188, 244, 281, 305
CviKI_1 RGCY 5 cut(s) 64, 188, 244, 281, 305
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 26, 332, 498
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 75, 195
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 328
FaeI CATG 1 cut(s) 208
FaqI GGGAC 1 cut(s) 341
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 77, 302
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 88
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 349, 424
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 2 cut(s) 49, 101
Hpy8I GTNNAC 2 cut(s) 349, 424
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 56, 356, 424, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 26, 332, 498
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 85
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 5 cut(s) 129, 155, 240, 301, 344
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 1 cut(s) 421
MaeI CTAG 2 cut(s) 77, 302
MaeIII GTNAC 2 cut(s) 166, 229
MboII GAAGA 7 cut(s) 92, 182, 371, 374, 377, 380, 425
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 178, 246, 490
MnlI CCTC 5 cut(s) 119, 122, 204, 289, 391
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeI CATATG 1 cut(s) 12
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 229
PciSI GCTCTTC 2 cut(s) 75, 195
PctI GAATGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 2 cut(s) 75, 195
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 3 cut(s) 178, 246, 490
SspMI CTAG 2 cut(s) 77, 302
TaaI ACNGT 1 cut(s) 201
TasI AATT 3 cut(s) 178, 246, 490
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 432
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 77, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.