Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004419.1

Orthogroup ID

OG0031304

Physical Location & Seq

Genomic Coordinates Reverse (-)

21295 .. 23763

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004419.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgtctcatattagaggtggcaaacgggccactaagcacgagcacggcactggcccggcactgcacggcccaagccccaatttcattgaacttgttattctctctgcaatggatcatagactcttactcattgcaactctgttttctttgctttgtctccttcacctttcttcagcccgcaaggagggagagaaatgcatcaagaacagtgactgcgactcaggattgcactgcgagacttgcgttgcaaacaataattttttgccgaaatgcactagaataaagcccataagtccaatttctcaagtgaaaacgctgccgtttaacaggtattcctggttaacaacccacaattcctttgcgaaactcggtgacaagtcggcgacgggatctgtgattttggctccgactaatcagcaggactccatcaccgatcagcttaatgtatgtgtccttccttatcttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.09

Weight (kDa)

8.91

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031304)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004419.1_g000005 Rmu_sc0007749.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	120, 397
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	9, 161, 230
AlwI	GGATC	2 cut(s)	120, 397
AlwNI	CAGNNNCTG	1 cut(s)	213
AoxI	GGCC	3 cut(s)	27, 52, 67
ApeKI	GCWGC	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	27, 53, 68
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	155, 383, 421
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BauI	CACGAG	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	3 cut(s)	61, 82, 304
BciT130I	CCWGG	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	9, 161, 230
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	56, 337
BmgT120I	GGNCC	3 cut(s)	27, 53, 68
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	56, 337
BmsI	GCATC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	2 cut(s)	114, 129
BseBI	CCWGG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	2 cut(s)	114, 129
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	29, 54, 69
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	3 cut(s)	9, 161, 230
BsnI	GGCC	3 cut(s)	29, 54, 69
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	112, 389, 433
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	29, 54, 69
BspCNI	CTCAG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	120, 397
BsrDI	GCAATG	2 cut(s)	114, 129
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	112, 389, 433
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	33, 220
BstKTI	GATC	3 cut(s)	115, 392, 436
BstMAI	GTCTC	3 cut(s)	9, 161, 230
BstMBI	GATC	3 cut(s)	112, 389, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	54, 335
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	29, 54, 69
BtsI	GCAGTG	2 cut(s)	59, 229
BtsIMutI	CAGTG	4 cut(s)	48, 59, 214, 229
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	27, 53, 68
CviJI	RGCY	8 cut(s)	29, 54, 69, 75, 176, 286, 404, 439
CviKI_1	RGCY	8 cut(s)	29, 54, 69, 75, 176, 286, 404, 439
DdeI	CTNAG	2 cut(s)	33, 220
DpnI	GATC	3 cut(s)	114, 391, 435
DpnII	GATC	3 cut(s)	112, 389, 433
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	200
FaiI	YATR	4 cut(s)	9, 117, 290, 448
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	29, 54, 69
HapII	CCGG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	3 cut(s)	120, 218, 422
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	155, 383, 421
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	202, 222
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	170, 464
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	7 cut(s)	64, 107, 134, 198, 229, 248, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	2 cut(s)	33, 220
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	112, 389, 433
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	7 cut(s)	36, 69, 207, 313, 322, 349, 404
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	209, 371
MalI	GATC	3 cut(s)	114, 391, 435
MboI	GATC	3 cut(s)	112, 389, 433
MboII	GAAGA	2 cut(s)	162, 455
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	4 cut(s)	79, 256, 297, 352
MlyI	GAGTC	3 cut(s)	114, 212, 416
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	2 cut(s)	8, 178
Mph1103I	ATGCAT	1 cut(s)	200
MseI	TTAA	4 cut(s)	324, 341, 441, 469
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	56, 337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	112, 389, 433
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	209, 371
NsiI	ATGCAT	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	3 cut(s)	114, 212, 416
PpsI	GAGTC	3 cut(s)	114, 212, 416
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	3 cut(s)	27, 53, 68
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	389
SaqAI	TTAA	4 cut(s)	324, 341, 441, 469
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	3 cut(s)	112, 389, 433
Sau96I	GGNCC	3 cut(s)	27, 53, 68
SchI	GAGTC	3 cut(s)	114, 212, 416
ScrFI	CCNGG	2 cut(s)	56, 337
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	19, 168, 332, 441
SfaNI	GCATC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	79, 256, 297, 352
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	54, 335
TaaI	ACNGT	1 cut(s)	209
TasI	AATT	4 cut(s)	79, 256, 297, 352
Tru1I	TTAA	4 cut(s)	324, 341, 441, 469
Tru9I	TTAA	4 cut(s)	324, 341, 441, 469
TscAI	CASTG	4 cut(s)	55, 66, 214, 236
TseFI	GTSAC	2 cut(s)	209, 371
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	209, 371
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	4 cut(s)	55, 66, 214, 236
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.