Rmu_sc0007749.1_g000001

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007749.1
OG0031304
Physical Location & Seq
Reverse (-)
1 .. 6330
6330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007749.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
atggatcatagactcttgctcattgcaactctgttttctttgctttgtctccttcacctttcttcagcccgcaaggagggagagaaatgcatcaagaacagtgactgcgactcaggattgcactgcgagacttgcgttgcaaacaataattttttgccgaaatgcactagaataaagcccataagtccaatttctcaagtgaaaacgctgccgtttaacaggtattcctggttaacaacccacaattcctttgcgaaactcggtgacaagtcggcgacgggatctgtgattttggctccgactaatcagcaggactccatcaccgatcagcttaataatggtgttagaggcttaatgctggacatgtatgactatttaggtgacatttggttatgtcactcgtacggtggcaactgctacaactacacagctttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.21

Weight (kDa)

7.57

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031304)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004419.1_g000005 Rmu_sc0007749.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 2 cut(s) 12, 289
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 363
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 331, 431
AluI AGCT 2 cut(s) 331, 431
Alw26I GTCTC 2 cut(s) 53, 122
AlwI GGATC 2 cut(s) 12, 289
AlwNI CAGNNNCTG 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 47, 275, 313, 392
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 53, 122
BfaI CTAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 195
BsiWI CGTACG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 53, 122
Bsp143I GATC 3 cut(s) 4, 281, 325
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 2 cut(s) 12, 289
BsrDI GCAATG 1 cut(s) 21
BssMI GATC 3 cut(s) 4, 281, 325
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 101, 407
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 112
BstKTI GATC 3 cut(s) 7, 284, 328
BstMAI GTCTC 2 cut(s) 53, 122
BstMBI GATC 3 cut(s) 4, 281, 325
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 106, 121
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 105
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 364
CviJI RGCY 6 cut(s) 68, 178, 296, 331, 351, 431
CviKI_1 RGCY 6 cut(s) 68, 178, 296, 331, 351, 431
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 112
DpnI GATC 3 cut(s) 6, 283, 327
DpnII GATC 3 cut(s) 4, 281, 325
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 92
FaeI CATG 1 cut(s) 367
FaiI YATR 5 cut(s) 9, 182, 365, 369, 394
FatI CATG 1 cut(s) 363
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 3 cut(s) 12, 110, 314
HpaI GTTAAC 1 cut(s) 234
HphI GGTGA 4 cut(s) 47, 275, 313, 392
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 94, 114
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 101, 407
HpyCH4V TGCA 5 cut(s) 26, 90, 121, 140, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 4, 281, 325
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 99, 205, 214, 241, 296, 344
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 101, 263, 380, 395
MalI GATC 3 cut(s) 6, 283, 327
MboI GATC 3 cut(s) 4, 281, 325
MboII GAAGA 1 cut(s) 54
MflI RGATCY 1 cut(s) 281
MluCI AATT 3 cut(s) 148, 189, 244
MlyI GAGTC 3 cut(s) 6, 104, 308
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 2 cut(s) 70, 341
Mph1103I ATGCAT 1 cut(s) 92
MseI TTAA 4 cut(s) 216, 233, 333, 353
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 3 cut(s) 4, 281, 325
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 4 cut(s) 101, 263, 380, 395
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 367
PciI ACATGT 1 cut(s) 363
Pfl23II CGTACG 1 cut(s) 402
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 3 cut(s) 6, 104, 308
PpsI GAGTC 3 cut(s) 6, 104, 308
PscI ACATGT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 4 cut(s) 216, 233, 333, 353
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 4, 281, 325
SchI GAGTC 3 cut(s) 6, 104, 308
ScrFI CCNGG 1 cut(s) 229
SetI ASST 5 cut(s) 60, 224, 333, 382, 433
SfaNI GCATC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 3 cut(s) 148, 189, 244
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 101, 407
TasI AATT 3 cut(s) 148, 189, 244
Tru1I TTAA 4 cut(s) 216, 233, 333, 353
Tru9I TTAA 4 cut(s) 216, 233, 333, 353
TscAI CASTG 2 cut(s) 106, 128
TseFI GTSAC 4 cut(s) 101, 263, 380, 395
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 4 cut(s) 101, 263, 380, 395
TspRI CASTG 2 cut(s) 106, 128
XceI RCATGY 1 cut(s) 367
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.