Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0025583

Physical Location & Seq

Genomic Coordinates Reverse (-)

48541 .. 54470

Gene Structure 5930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004465.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4068 bp

atgagcaaccttaagctacgggtagacgtggttggcgcgcgcaatctgttactaaaacatgggcaaggttcatctggcgcctttgtggagctaaaattggatgaactaaagcagcgcaccactactaaagagcaagataaccccatttggaacgaaagcttctccttcaacatttctgatccgtccaaactagaaaagcttgttcttaatgcctatgtctacagcagtgtccaagctacctcctccaagtccaaggccaagttatttcttggaaaagttagcctcccgagtaattcatttgtcaattcttctgatgctgttgtcttgcaataccatttggaaaagcgtcgccgcatctcagttgcaagtgtaagcggagacctcggcctaaaggtttatcttactgatgatgacactgattccaccacggaaattgctgcagttgaatgtcttgcatggaccagtcgagattcaaatcctattgcactgatggaagttgggacaagtcgtgatcacggagaaagtactgcaagcacaagcaactcctccagccaaatagctgcagatgtttttgctattgaaattgcaaatccggttagaaccctagctctattgccccaaggagtttcaactactgctggtgtgattaacagcatcacatcactcagtcgttcatatgacatggttgggacaggaattacctctcccgaccaagaagacgatgcaaacacgtcagttaaatcctccaccccagttaatctttcttcaaatgacatggatgggacagagctgacctcttccgaccaagaagacgatgcaaacacgtcagttaagtcctccaccccagttaacctttcttcaaatgacatggatgggacagagctgacctcttccgaccaagaagacgatgcaaacacgtcagttaagtcctccaccgctcttcaatcccttgcaattgaacatccaggtacatatccagctcttcaatggacccaaggagattcaaatcctcgtactgaaatttccagtcctacttctccaaatgcacaagctgaagtcggggcagggcacacatcttctgaccatggagaaagcgcaaacacgccaattgctgaggttcagtcccgtgcaattacaaatgcatcaattctagctcttgcatggaccgaaggagattcaaatcctcctgctgcaatttataacgacagtaatacttctccaaatgtggaagcagattccgaagcacaagcagcggaagcgaaagttgggacaaagcacacctttattcatagtcccaacccaagtcatgacgagggagacaagataccaagtacctcagttccagttggacccctgtcttttctctatgtaaggattattaaggctcgtaatcttgctgacattaataatgcaggaaatatttctctgtgtgttgaggcaacaatagagagctatatagggagtacaaagcagcactttggagatgagaaaaatccagtatggaatcaggtcatttccttttcagtggatcggattaaatcatcagatttagttgttgcgattacggataaagatcttgtggtgggcagggtaagctttaagttggatggcagcattccaagatggttagatgctgctcctctggccccaaaatggtacaggcttgtggaccagtttcgaggaaataggcaggctcagctgatgcttgcaatctggtatggtaacgaagcagatgaggccttttccgatgcatggaattctgatgcagctggtgttgtcgattacacaccacttggggtgcttggtccaaatgcatatcttgcaccaaggttgtggtatgttcgcgttatcattctcggggcagaaatcctgtttccagaagaaaacaatcgtttccgcgatgcatatgccaaggtatggctgaaagaccaggttttggaaacaaaagcaatcaatgctcagaatcaaagcctccgttggaatgaagatctctggtttgtggctgctgcaccttttgaagatacttgtgtggtggttgaagtcacaggtcgtgcacgtccgggcgagggcaaagacgaagtcattggtacgaagtcgataccgctggactctgtatactttcatttaaatgattgtgatgattgtctaatcccttcccagtggtatacttttcggccaaacttccagtcaaaaagtgaaaaatttgaaagacgcatccatctccgaatttggttcgaaggaggataccatgttctaaatgagtcacctctttataacagtgatttacgcccctcagcacaacagctctggaggacaccaatcggaaccgtcaatcttgaaatccaggatgctcaggggattcagacgatgacaacacgtgatggaaggggcacagcagatacatattgtgtagccaagtacggcaatatatgggtccggacaaaaaccgttggtgacaatctgtgtccaaactatgatgaatcattcacctggaatgtttatgatcctgctacacttcttactgtaggtgtatttaataacagccagcttggtgatgacagttccaatggtaatgaagacccgaagatcgggaagatcagaatttgtatctcaacactagaagcaggccgcctgtacacacggtcatatccactgttggctgttcaccctactggtgttgagaagatgggggagttgaatttgacaatccggtttcgttgcacatcatttaaaaaaatgctttacatgtactcacaaccgctgatgccgaagatgcatagttcacatcctatttctgattcgcagcttgatatattagttccagaagccatcaacctagttgctaaacggttcagacaatacgagccaccacttaggaagggagtggtggattacatgtctgatggggactcacatctttggagtatgcgacggagcagtgcaaatatcttcagggttagcatggttttgtcaggattattttctgtagccggatggttttttgatatttgctcgtggaagaatcctatattgacagtacttgcccacgctttcttcctcgcgcttgtttgctccccgagactaattttgcccacagcctttctttacatgtttctaacaggcctatggaacttccgcatccggcaaagggatcctctcctcatttacacaaagctcatggaagctgagttagaccctgatgagctggaagaggaatttgacacttacccaacaagccagagactggaggtggtgaaggagaggtatgaccgcctaaggagaaatgctagtagagttcagacaatagttagtgatgtagctgctgtgggggagcgaattcagatattgttaagctggcaggattcacgcgctacagccctcttcatcacattctgccttgtatctgccttggtcttgtatgtgacaccactccaagtagtggtaggattggcaggtttctatatgatgatgcatccaagatttcgcaataggattccatcagcagtagtaccccttatcaacttctttcacaggctgcctactaggactggtcctctcaatcttcttcttcttctgcccctgccaccgcaatgtcgaccaagccaaccacctccgcctctgtggctaccgccccgacccgctcaacctcagcagcgtcatccacgctctctgcgactgcaactgcctcgaagaagcccacaaccgatttacccactccttgactcagatctacaactcaggtcatcggcgaatcagagatcggagcccagccatgtccgacgaggagagccatttcgagcccagccatttccttttaattttgtgacggattggatagtgaagagagaagaggagcagaaggaagaagaagaaggcatggggtgcatgacgtggagaagacgaaggcagtccagccagaatcgggatggaggagcgtgggtgtcaccggtcaccggtcactggattccggtcaccgttcgccggattccggtcaccggtggccggtcgccagcgccctgccactggtcactggaggccggtaaggtggaggatgacttctccctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1355

Amino Acids

150.9

Weight (kDa)

5.64

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025583)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004465.1_g000009 Rmu_sc0004465.1_g000033 Rmu_sc0004465.1_g000036

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1200, 2274
Acc36I	ACCTGC	1 cut(s)	3443
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	4 cut(s)	1917, 1936, 3244, 3439
AccBSI	CCGCTC	2 cut(s)	938, 3641
AccI	GTMKAC	5 cut(s)	24, 219, 2115, 2165, 3595
AccII	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
AccIII	TCCGGA	1 cut(s)	2436
AclWI	GGATC	5 cut(s)	173, 1536, 2498, 3146, 3159
AcoI	YGGCCR	2 cut(s)	2174, 4000
AcsI	RAATTY	8 cut(s)	1020, 1756, 2201, 2226, 2601, 2698, 3215, 3336
AcuI	CTGAAG	2 cut(s)	1074, 2935
AcvI	CACGTG	1 cut(s)	2378
AcyI	GRCGYC	1 cut(s)	78
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	7 cut(s)	729, 822, 915, 2375, 2745, 2895, 3108
AgeI	ACCGGT	3 cut(s)	3946, 3953, 3995
AjiI	CACGTC	6 cut(s)	28, 732, 825, 918, 2057, 3891
AjnI	CCWGG	4 cut(s)	964, 1929, 2343, 2489
AjuI	GAANNNNNNNTTGG	2 cut(s)	1248, 1280
AloI	GAACNNNNNNTCC	2 cut(s)	2235, 2267
Alw21I	GWGCWC	1 cut(s)	2056
Alw26I	GTCTC	4 cut(s)	372, 1311, 3073, 3235
Alw44I	GTGCAC	1 cut(s)	2052
AlwI	GGATC	5 cut(s)	173, 1536, 2498, 3146, 3159
AlwNI	CAGNNNCTG	1 cut(s)	3244
Ama87I	CYCGRG	3 cut(s)	286, 1856, 3076
Aor13HI	TCCGGA	1 cut(s)	2436
AoxI	GGCC	9 cut(s)	255, 385, 1644, 1737, 2174, 2626, 3121, 4000, 4035
ApaLI	GTGCAC	1 cut(s)	2052
ApoI	RAATTY	8 cut(s)	1020, 1756, 2201, 2226, 2601, 2698, 3215, 3336
ArsI	GACNNNNNNTTYG	4 cut(s)	2064, 2096, 2171, 2203
AseI	ATTAAT	1 cut(s)	1404
AsiGI	ACCGGT	3 cut(s)	3946, 3953, 3995
Asp700I	GAANNNNTTC	1 cut(s)	1420
AspLEI	GCGC	9 cut(s)	38, 40, 42, 80, 117, 1097, 3064, 3371, 4015
AspS9I	GGNCC	9 cut(s)	459, 990, 1164, 1349, 1645, 1669, 1805, 2434, 3551
AsuC2I	CCSGG	1 cut(s)	2061
AsuII	TTCGAA	1 cut(s)	2235
AvaI	CYCGRG	3 cut(s)	286, 1856, 3076
AvaII	GGWCC	8 cut(s)	459, 990, 1164, 1349, 1669, 1805, 2434, 3551
AxyI	CCTNAGG	1 cut(s)	3275
BaeGI	GKGCMC	3 cut(s)	1071, 2056, 2393
BaeI	ACNNNNGTAYC	2 cut(s)	2013, 2046
BamHI	GGATCC	1 cut(s)	3151
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	3768, 3802
BauI	CACGAG	1 cut(s)	3013
BbrPI	CACGTG	1 cut(s)	2378
BbsI	GAAGAC	5 cut(s)	723, 816, 909, 2583, 3904
Bbv12I	GWGCWC	1 cut(s)	2056
BbvCI	CCTCAGC	3 cut(s)	1113, 2293, 3648
BceAI	ACGGC	1 cut(s)	2437
BcgI	CGANNNNNNTGC	4 cut(s)	1889, 1923, 3668, 3702
BciT130I	CCWGG	4 cut(s)	966, 1931, 2345, 2491
BciVI	GTATCC	1 cut(s)	2237
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	2061
BcoDI	GTCTC	4 cut(s)	372, 1311, 3073, 3235
BfaI	CTAG	7 cut(s)	191, 605, 1151, 2618, 2837, 3288, 3543
BfmI	CTRYAG	6 cut(s)	220, 438, 561, 2523, 2985, 3372
BfoI	RGCGCY	2 cut(s)	81, 4016
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	3443
BfuI	GTATCC	1 cut(s)	2237
BglI	GCCNNNNNGGC	1 cut(s)	3622
BglII	AGATCT	3 cut(s)	1573, 1987, 3727
BlpI	GCTNAGC	1 cut(s)	1695
BmcAI	AGTACT	2 cut(s)	526, 3039
Bme1390I	CCNGG	5 cut(s)	966, 1931, 2061, 2345, 2491
Bme18I	GGWCC	8 cut(s)	459, 990, 1164, 1349, 1669, 1805, 2434, 3551
BmeT110I	CYCGRG	3 cut(s)	286, 1856, 3076
BmgBI	CACGTC	6 cut(s)	28, 732, 825, 918, 2057, 3891
BmgT120I	GGNCC	9 cut(s)	459, 990, 1164, 1349, 1645, 1669, 1805, 2434, 3551
BmiI	GGNNCC	8 cut(s)	79, 992, 1351, 1647, 2326, 2435, 3153, 3765
BmrFI	CCNGG	5 cut(s)	966, 1931, 2061, 2345, 2491
BmrI	ACTGGG	3 cut(s)	746, 839, 2152
BmuI	ACTGGG	3 cut(s)	746, 839, 2152
BoxI	GACNNNNGTC	1 cut(s)	1354
BpiI	GAAGAC	5 cut(s)	723, 816, 909, 2583, 3904
BplI	GAGNNNNNCTC	4 cut(s)	779, 811, 872, 904
BpmI	CTGGAG	4 cut(s)	532, 2329, 3266, 4052
Bpu10I	CCTNAGC	4 cut(s)	1113, 2293, 2352, 3648
Bpu1102I	GCTNAGC	1 cut(s)	1695
Bpu14I	TTCGAA	1 cut(s)	2235
BpuMI	CCSGG	1 cut(s)	2061
BsaAI	YACGTR	1 cut(s)	2378
BsaBI	GATNNNNATC	4 cut(s)	474, 1005, 1179, 1572
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	9 cut(s)	252, 382, 426, 619, 994, 1084, 1826, 1911, 3408
BsaWI	WCCGGW	8 cut(s)	592, 2436, 2709, 3946, 3953, 3967, 3988, 3995
BsaXI	ACNNNNNCTCC	2 cut(s)	3924, 3954
Bse118I	RCCGGY	5 cut(s)	3946, 3953, 3995, 4002, 4037
Bse21I	CCTNAGG	1 cut(s)	3275
Bse3DI	GCAATG	1 cut(s)	3596
Bse8I	GATNNNNATC	4 cut(s)	474, 1005, 1179, 1572
BseAI	TCCGGA	1 cut(s)	2436
BseBI	CCWGG	4 cut(s)	966, 1931, 2345, 2491
BseDI	CCNNGG	9 cut(s)	252, 382, 426, 619, 994, 1084, 1826, 1911, 3408
BseJI	GATNNNNATC	4 cut(s)	474, 1005, 1179, 1572
BseMI	GCAATG	1 cut(s)	3596
BsePI	GCGCGC	2 cut(s)	36, 38
BseRI	GAGGAG	7 cut(s)	232, 535, 1629, 3149, 3798, 3866, 3945
BseSI	GKGCMC	3 cut(s)	1071, 2056, 2393
BseYI	CCCAGC	2 cut(s)	3767, 3801
BsgI	GTGCAG	1 cut(s)	1992
Bsh1236I	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
Bsh1285I	CGRYCG	1 cut(s)	4007
BshFI	GGCC	9 cut(s)	257, 387, 1646, 1739, 2176, 2628, 3123, 4002, 4037
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	3 cut(s)	3946, 3953, 3995
BsiEI	CGRYCG	1 cut(s)	4007
BsiHKAI	GWGCWC	1 cut(s)	2056
BsiHKCI	CYCGRG	3 cut(s)	286, 1856, 3076
BslFI	GGGAC	8 cut(s)	514, 703, 796, 889, 1108, 1278, 1282, 2921
BsmAI	GTCTC	4 cut(s)	372, 1311, 3073, 3235
BsmFI	GGGAC	8 cut(s)	514, 703, 796, 889, 1108, 1278, 1282, 2921
BsmI	GAATGC	1 cut(s)	1614
BsnI	GGCC	9 cut(s)	257, 387, 1646, 1739, 2176, 2628, 3123, 4002, 4037
Bso31I	GGTCTC	1 cut(s)	372
BsoBI	CYCGRG	3 cut(s)	286, 1856, 3076
Bsp119I	TTCGAA	1 cut(s)	2235
Bsp1286I	GDGCHC	5 cut(s)	1071, 2056, 2393, 3768, 3802
Bsp13I	TCCGGA	1 cut(s)	2436
Bsp1407I	TGTACA	1 cut(s)	2634
Bsp1720I	GCTNAGC	1 cut(s)	1695
Bsp19I	CCATGG	1 cut(s)	1084
BspANI	GGCC	9 cut(s)	257, 387, 1646, 1739, 2176, 2628, 3123, 4002, 4037
BspEI	TCCGGA	1 cut(s)	2436
BspFNI	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
BspHI	TCATGA	1 cut(s)	1306
BspLI	GGNNCC	8 cut(s)	79, 992, 1351, 1647, 2326, 2435, 3153, 3765
BspMAI	CTGCAG	2 cut(s)	442, 565
BspMI	ACCTGC	1 cut(s)	3443
BspPI	GGATC	5 cut(s)	173, 1536, 2498, 3146, 3159
BspQI	GCTCTTC	2 cut(s)	945, 987
BspT104I	TTCGAA	1 cut(s)	2235
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	372
BsrBI	CCGCTC	2 cut(s)	938, 3641
BsrDI	GCAATG	1 cut(s)	3596
BsrFI	RCCGGY	5 cut(s)	3946, 3953, 3995, 4002, 4037
BsrGI	TGTACA	1 cut(s)	2634
BssAI	RCCGGY	5 cut(s)	3946, 3953, 3995, 4002, 4037
BssECI	CCNNGG	9 cut(s)	252, 382, 426, 619, 994, 1084, 1826, 1911, 3408
BssHII	GCGCGC	2 cut(s)	36, 38
BssNAI	GTATAC	2 cut(s)	2116, 2166
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	3013
BssT1I	CCWWGG	7 cut(s)	252, 619, 994, 1084, 1826, 1911, 3408
Bst1107I	GTATAC	2 cut(s)	2116, 2166
Bst2BI	CACGAG	1 cut(s)	3013
Bst2UI	CCWGG	4 cut(s)	966, 1931, 2345, 2491
Bst6I	CTCTTC	8 cut(s)	802, 895, 945, 987, 3204, 3386, 3836, 3843
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	3 cut(s)	1820, 1955, 3882
BstAUI	TGTACA	1 cut(s)	2634
BstBAI	YACGTR	1 cut(s)	2378
BstBI	TTCGAA	1 cut(s)	2235
BstC8I	GCNNGC	9 cut(s)	38, 40, 532, 1692, 1707, 2546, 2626, 3356, 4011
BstDSI	CCRYGG	2 cut(s)	426, 1084
BstEII	GGTNACC	3 cut(s)	3949, 3970, 3991
BstFNI	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
BstH2I	RGCGCY	2 cut(s)	81, 4016
BstHHI	GCGC	9 cut(s)	38, 40, 42, 80, 117, 1097, 3064, 3371, 4015
BstMAI	GTCTC	4 cut(s)	372, 1311, 3073, 3235
BstMCI	CGRYCG	1 cut(s)	4007
BstNI	CCWGG	4 cut(s)	966, 1931, 2345, 2491
BstNSI	RCATGY	3 cut(s)	2749, 2899, 3112
BstPAI	GACNNNNGTC	1 cut(s)	1354
BstPI	GGTNACC	3 cut(s)	3949, 3970, 3991
BstSCI	CCNGG	5 cut(s)	964, 1929, 2059, 2343, 2489
BstSFI	CTRYAG	6 cut(s)	220, 438, 561, 2523, 2985, 3372
BstSLI	GKGCMC	3 cut(s)	1071, 2056, 2393
BstUI	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
BstV2I	GAAGAC	5 cut(s)	723, 816, 909, 2583, 3904
BstX2I	RGATCY	4 cut(s)	1573, 1987, 3151, 3727
BstXI	CCANNNNNNTGG	1 cut(s)	1833
BstYI	RGATCY	4 cut(s)	1573, 1987, 3151, 3727
BstZ17I	GTATAC	2 cut(s)	2116, 2166
Bsu36I	CCTNAGG	1 cut(s)	3275
BsuI	GTATCC	1 cut(s)	2237
BsuRI	GGCC	9 cut(s)	257, 387, 1646, 1739, 2176, 2628, 3123, 4002, 4037
BtgI	CCRYGG	2 cut(s)	426, 1084
BtgZI	GCGATG	1 cut(s)	1914
BtrI	CACGTC	6 cut(s)	28, 732, 825, 918, 2057, 3891
BtsI	GCAGTG	2 cut(s)	232, 2944
BveI	ACCTGC	1 cut(s)	3443
Cac8I	GCNNGC	9 cut(s)	38, 40, 532, 1692, 1707, 2546, 2626, 3356, 4011
CaiI	CAGNNNCTG	1 cut(s)	3244
CciI	TCATGA	1 cut(s)	1306
CfoI	GCGC	9 cut(s)	38, 40, 42, 80, 117, 1097, 3064, 3371, 4015
Cfr10I	RCCGGY	5 cut(s)	3946, 3953, 3995, 4002, 4037
Cfr13I	GGNCC	9 cut(s)	459, 990, 1164, 1349, 1645, 1669, 1805, 2434, 3551
CseI	GACGC	3 cut(s)	335, 2220, 3644
CsiI	ACCWGGT	1 cut(s)	1929
CspAI	ACCGGT	3 cut(s)	3946, 3953, 3995
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
DinI	GGCGCC	1 cut(s)	79
DraI	TTTAAA	2 cut(s)	2127, 2731
EaeI	YGGCCR	2 cut(s)	2174, 4000
Eam1104I	CTCTTC	8 cut(s)	802, 895, 945, 987, 3204, 3386, 3836, 3843
EarI	CTCTTC	8 cut(s)	802, 895, 945, 987, 3204, 3386, 3836, 3843
EciI	GGCGGA	1 cut(s)	3603
Eco130I	CCWWGG	7 cut(s)	252, 619, 994, 1084, 1826, 1911, 3408
Eco147I	AGGCCT	2 cut(s)	1739, 3123
Eco24I	GRGCYC	2 cut(s)	3768, 3802
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	8 cut(s)	459, 990, 1164, 1349, 1669, 1805, 2434, 3551
Eco57I	CTGAAG	2 cut(s)	1074, 2935
Eco72I	CACGTG	1 cut(s)	2378
Eco81I	CCTNAGG	1 cut(s)	3275
Eco88I	CYCGRG	3 cut(s)	286, 1856, 3076
Eco91I	GGTNACC	3 cut(s)	3949, 3970, 3991
EcoO65I	GGTNACC	3 cut(s)	3949, 3970, 3991
EcoRI	GAATTC	2 cut(s)	1756, 3336
EcoRII	CCWGG	4 cut(s)	964, 1929, 2343, 2489
EcoT14I	CCWWGG	7 cut(s)	252, 619, 994, 1084, 1826, 1911, 3408
EcoT22I	ATGCAT	6 cut(s)	1144, 1753, 1816, 1906, 2778, 3474
EcoT38I	GRGCYC	2 cut(s)	3768, 3802
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	7 cut(s)	252, 619, 994, 1084, 1826, 1911, 3408
FalI	AAGNNNNNCTT	4 cut(s)	1265, 1297, 1460, 1492
FaqI	GGGAC	8 cut(s)	514, 703, 796, 889, 1108, 1278, 1282, 2921
FauI	CCCGC	1 cut(s)	3646
FauNDI	CATATG	2 cut(s)	676, 1906
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	5 cut(s)	24, 219, 2115, 2165, 3595
FriOI	GRGCYC	2 cut(s)	3768, 3802
FspBI	CTAG	7 cut(s)	191, 605, 1151, 2618, 2837, 3288, 3543
GlaI	GCGC	9 cut(s)	37, 39, 41, 79, 116, 1096, 3063, 3370, 4014
GsaI	CCCAGC	2 cut(s)	3771, 3805
GsuI	CTGGAG	4 cut(s)	532, 2329, 3266, 4052
HaeII	RGCGCY	2 cut(s)	81, 4016
HaeIII	GGCC	9 cut(s)	257, 387, 1646, 1739, 2176, 2628, 3123, 4002, 4037
HgaI	GACGC	3 cut(s)	335, 2220, 3644
HhaI	GCGC	9 cut(s)	38, 40, 42, 80, 117, 1097, 3064, 3371, 4015
Hin1I	GRCGYC	1 cut(s)	78
Hin6I	GCGC	9 cut(s)	36, 38, 40, 78, 115, 1095, 3062, 3369, 4013
HinP1I	GCGC	9 cut(s)	36, 38, 40, 78, 115, 1095, 3062, 3369, 4013
HincII	GTYRAC	2 cut(s)	850, 3596
HindII	GTYRAC	2 cut(s)	850, 3596
HindIII	AAGCTT	3 cut(s)	157, 197, 1594
HpaI	GTTAAC	1 cut(s)	850
Hpy99I	CGWCG	3 cut(s)	351, 2934, 3783
HpyCH4IV	ACGT	7 cut(s)	27, 731, 824, 917, 2056, 2377, 3890
HpySE526I	ACGT	7 cut(s)	27, 731, 824, 917, 2056, 2377, 3890
Hsp92I	GRCGYC	1 cut(s)	78
HspAI	GCGC	9 cut(s)	36, 38, 40, 78, 115, 1095, 3062, 3369, 4013
KasI	GGCGCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	2436
Ksp22I	TGATCA	1 cut(s)	511
KspAI	GTTAAC	1 cut(s)	850
LguI	GCTCTTC	2 cut(s)	945, 987
LmnI	GCTCC	8 cut(s)	88, 1642, 2934, 3077, 3331, 3763, 3853, 3932
MabI	ACCWGGT	1 cut(s)	1929
MaeI	CTAG	7 cut(s)	191, 605, 1151, 2618, 2837, 3288, 3543
MaeII	ACGT	7 cut(s)	27, 731, 824, 917, 2056, 2377, 3890
MbiI	CCGCTC	2 cut(s)	938, 3641
MfeI	CAATTG	2 cut(s)	954, 1107
MflI	RGATCY	4 cut(s)	1573, 1987, 3151, 3727
MhlI	GDGCHC	5 cut(s)	1071, 2056, 2393, 3768, 3802
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	4 cut(s)	2102, 2270, 2903, 3716
MmeI	TCCRAC	6 cut(s)	825, 918, 1327, 1584, 1958, 3802
Mph1103I	ATGCAT	6 cut(s)	1144, 1753, 1816, 1906, 2778, 3474
MroI	TCCGGA	1 cut(s)	2436
MroXI	GAANNNNTTC	1 cut(s)	1420
MslI	CAYNNNNRTG	2 cut(s)	2127, 3589
MspA1I	CMGCKG	5 cut(s)	1253, 1699, 1769, 2104, 2761
MspCI	CTTAAG	1 cut(s)	11
MspR9I	CCNGG	5 cut(s)	966, 1931, 2061, 2345, 2491
MunI	CAATTG	2 cut(s)	954, 1107
Mva1269I	GAATGC	1 cut(s)	1614
MvaI	CCWGG	4 cut(s)	966, 1931, 2345, 2491
MvnI	CGCG	6 cut(s)	38, 40, 1845, 1899, 3062, 3369
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	2061
NcoI	CCATGG	1 cut(s)	1084
NdeI	CATATG	2 cut(s)	676, 1906
NlaIV	GGNNCC	8 cut(s)	79, 992, 1351, 1647, 2326, 2435, 3153, 3765
NmeAIII	GCCGAG	1 cut(s)	363
NsiI	ATGCAT	6 cut(s)	1144, 1753, 1816, 1906, 2778, 3474
NspI	RCATGY	3 cut(s)	2749, 2899, 3112
NspV	TTCGAA	1 cut(s)	2235
PagI	TCATGA	1 cut(s)	1306
PauI	GCGCGC	2 cut(s)	36, 38
PceI	AGGCCT	2 cut(s)	1739, 3123
PciI	ACATGT	3 cut(s)	2745, 2895, 3108
PciSI	GCTCTTC	2 cut(s)	945, 987
PcsI	WCGNNNNNNNCGW	1 cut(s)	3670
PctI	GAATGC	1 cut(s)	1614
PdmI	GAANNNNTTC	1 cut(s)	1420
PflFI	GACNNNGTC	1 cut(s)	2078
PflMI	CCANNNNNTGG	4 cut(s)	1917, 1936, 3244, 3439
PfoI	TCCNGGA	1 cut(s)	2343
PinAI	ACCGGT	3 cut(s)	3946, 3953, 3995
PleI	GAGTC	4 cut(s)	2102, 2269, 2903, 3716
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	2378
PmlI	CACGTG	1 cut(s)	2378
PpsI	GAGTC	4 cut(s)	2102, 2269, 2903, 3716
Ppu21I	YACGTR	1 cut(s)	2378
PscI	ACATGT	3 cut(s)	2745, 2895, 3108
PshAI	GACNNNNGTC	1 cut(s)	1354
PshBI	ATTAAT	1 cut(s)	1404
PsiI	TTATAA	2 cut(s)	1200, 2274
Psp6I	CCWGG	4 cut(s)	964, 1929, 2343, 2489
PspCI	CACGTG	1 cut(s)	2378
PspEI	GGTNACC	3 cut(s)	3949, 3970, 3991
PspFI	CCCAGC	2 cut(s)	3767, 3801
PspGI	CCWGG	4 cut(s)	964, 1929, 2343, 2489
PspN4I	GGNNCC	8 cut(s)	79, 992, 1351, 1647, 2326, 2435, 3153, 3765
PspPI	GGNCC	9 cut(s)	459, 990, 1164, 1349, 1645, 1669, 1805, 2434, 3551
PstI	CTGCAG	2 cut(s)	442, 565
PstNI	CAGNNNCTG	1 cut(s)	3244
PsuI	RGATCY	4 cut(s)	1573, 1987, 3151, 3727
PsyI	GACNNNGTC	1 cut(s)	2078
PteI	GCGCGC	2 cut(s)	36, 38
PvuII	CAGCTG	2 cut(s)	1699, 1769
RseI	CAYNNNNRTG	2 cut(s)	2127, 3589
SalI	GTCGAC	1 cut(s)	3594
SapI	GCTCTTC	2 cut(s)	945, 987
Sau96I	GGNCC	9 cut(s)	459, 990, 1164, 1349, 1645, 1669, 1805, 2434, 3551
ScaI	AGTACT	2 cut(s)	526, 3039
SchI	GAGTC	4 cut(s)	2102, 2270, 2903, 3716
ScrFI	CCNGG	5 cut(s)	966, 1931, 2061, 2345, 2491
SduI	GDGCHC	5 cut(s)	1071, 2056, 2393, 3768, 3802
SexAI	ACCWGGT	1 cut(s)	1929
SfcI	CTRYAG	6 cut(s)	220, 438, 561, 2523, 2985, 3372
SfoI	GGCGCC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	2235
SgrAI	CRCCGGYG	1 cut(s)	3995
SinI	GGWCC	8 cut(s)	459, 990, 1164, 1349, 1669, 1805, 2434, 3551
SmiI	ATTTAAAT	1 cut(s)	2127
SmiMI	CAYNNNNRTG	2 cut(s)	2127, 3589
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SseBI	AGGCCT	2 cut(s)	1739, 3123
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	1 cut(s)	1420
SspMI	CTAG	7 cut(s)	191, 605, 1151, 2618, 2837, 3288, 3543
StuI	AGGCCT	2 cut(s)	1739, 3123
StyD4I	CCNGG	5 cut(s)	964, 1929, 2059, 2343, 2489
StyI	CCWWGG	7 cut(s)	252, 619, 994, 1084, 1826, 1911, 3408
SwaI	ATTTAAAT	1 cut(s)	2127
TaiI	ACGT	7 cut(s)	30, 734, 827, 920, 2059, 2380, 3893
TaqI	TCGA	8 cut(s)	466, 1678, 1779, 2096, 2235, 3595, 3688, 3796
TaqII	GACCGA	1 cut(s)	1181
TatI	WGTACW	5 cut(s)	524, 1463, 2634, 2748, 3037
TauI	GCSGC	2 cut(s)	354, 2631
TspGWI	ACGGA	7 cut(s)	171, 443, 531, 1580, 1964, 2947, 3842
Tth111I	GACNNNGTC	1 cut(s)	2078
Van91I	CCANNNNNTGG	4 cut(s)	1917, 1936, 3244, 3439
Vha464I	CTTAAG	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	2052
VpaK11BI	GGWCC	8 cut(s)	459, 990, 1164, 1349, 1669, 1805, 2434, 3551
VspI	ATTAAT	1 cut(s)	1404
XapI	RAATTY	8 cut(s)	1020, 1756, 2201, 2226, 2601, 2698, 3215, 3336
XceI	RCATGY	3 cut(s)	2749, 2899, 3112
XcmI	CCANNNNNNNNNTGG	2 cut(s)	984, 3923
XmiI	GTMKAC	5 cut(s)	24, 219, 2115, 2165, 3595
XmnI	GAANNNNTTC	1 cut(s)	1420
XspI	CTAG	7 cut(s)	191, 605, 1151, 2618, 2837, 3288, 3543
ZrmI	AGTACT	2 cut(s)	526, 3039
Zsp2I	ATGCAT	6 cut(s)	1144, 1753, 1816, 1906, 2778, 3474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.