Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0025583

Physical Location & Seq

Genomic Coordinates Reverse (-)

142412 .. 143571

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004465.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgctaattacctcgagcatatgcatcaagtcaacaacacgtgaaggaaggggcatagcagatacatattgtgtagccaagtacggcaatatatgggtccggacaaaaaccgttggtgacaatctgtgtccaaactatgatgaatccttcacttggaatgtttatgatcctactacagttcttactgtaggtgtatttaataacagccagcttggtgatgacagttccaatggtaatgaagacccgaagatcgggaagatcagaatttgtatctcaacactagaagcaggccgcctatacacacggttatatccactgttggctgttcaccatactggtgttgagaagatgggggagttgaatttaacaatccggtttcgttgcacatcatttaaaaaaatgcttcacatgtactcacaaccgctgatgccgaagatgcatagttcacatcgtatttctgattcgcaacttgatatattagttccagaagccatcaacctagttgctaaacggttcagacaatacgagccaccacttaggaagggactggtggattacatgtctgatggggactcatatctttggagtatgcgacagagcagtgcaaatatcttcagggttagcatggttttgtcaagattattttctgtagccggatggtgttttgatatttgctcatggaagaatcctatattgacagtacttgcccaggctttctttctcgcgcttgtttgctccccgagactaattttacccacagcctttctttacatgtttctaacaggcctatggaacttccgcatccggcaaagggaccctctcctcatttacacaaagcgcatggaagctgagttagaccttgatgagctggaagaggaatttgacactttcccaacaagccagagactggaggtggtgaaggagcggtttgaccgcctaaggagaaatactagtagagttcagacaatagttagtgatgtagctgctgtgggggtgcgaattcagatattgttaagctggcaggattcacgcgctacaaccctcttcatcacattctgcttgtatctgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

357

Amino Acids

41.09

Weight (kDa)

8.79

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025583)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004465.1_g000009 Rmu_sc0004465.1_g000033 Rmu_sc0004465.1_g000036

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccBSI	CCGCTC	1 cut(s)	925
AccII	CGCG	2 cut(s)	725, 1032
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	5 cut(s)	292, 422, 799, 925, 934
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	4 cut(s)	264, 361, 878, 999
AcuI	CTGAAG	1 cut(s)	598
AcvI	CACGTG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	83, 413, 702
AfiI	CCNNNNNNNGG	4 cut(s)	153, 251, 811, 907
AflIII	ACRYGT	4 cut(s)	38, 408, 558, 771
AgsI	TTSAA	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	5 cut(s)	211, 848, 868, 983, 1017
AluI	AGCT	5 cut(s)	211, 848, 868, 983, 1017
Alw26I	GTCTC	2 cut(s)	736, 898
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	2 cut(s)	13, 739
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	2 cut(s)	289, 784
ApeKI	GCWGC	1 cut(s)	983
ApoI	RAATTY	4 cut(s)	264, 361, 878, 999
AspLEI	GCGC	3 cut(s)	727, 840, 1034
AspS9I	GGNCC	2 cut(s)	97, 814
AsuHPI	GGTGA	4 cut(s)	128, 227, 320, 928
AvaI	CYCGRG	2 cut(s)	13, 739
AvaII	GGWCC	2 cut(s)	97, 814
AxyI	CCTNAGG	1 cut(s)	938
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	970
BccI	CCATC	4 cut(s)	343, 500, 560, 651
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	2 cut(s)	736, 898
BcuI	ACTAGT	1 cut(s)	950
BfaI	CTAG	3 cut(s)	281, 500, 951
BfmI	CTRYAG	3 cut(s)	174, 186, 648
BisI	GCNGC	2 cut(s)	292, 984
BlsI	GCNGC	2 cut(s)	293, 985
BmcAI	AGTACT	1 cut(s)	702
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	2 cut(s)	97, 814
BmeT110I	CYCGRG	2 cut(s)	13, 739
BmgT120I	GGNCC	2 cut(s)	97, 814
BmiI	GGNNCC	3 cut(s)	98, 815, 816
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	4 cut(s)	33, 417, 426, 810
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	929
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	2 cut(s)	99, 372
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 251, 811, 907
Bse1I	ACTGG	3 cut(s)	340, 552, 912
Bse21I	CCTNAGG	1 cut(s)	938
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	662, 801
BseLI	CCNNNNNNNGG	4 cut(s)	153, 251, 811, 907
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	3 cut(s)	340, 552, 912
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	970
Bsh1236I	CGCG	2 cut(s)	725, 1032
BshFI	GGCC	2 cut(s)	291, 786
BsiHKCI	CYCGRG	2 cut(s)	13, 739
BsiSI	CCGG	4 cut(s)	100, 373, 654, 805
BslFI	GGGAC	3 cut(s)	558, 584, 827
BslI	CCNNNNNNNGG	4 cut(s)	153, 251, 811, 907
BsmAI	GTCTC	2 cut(s)	736, 898
BsmFI	GGGAC	3 cut(s)	558, 584, 827
BsnI	GGCC	2 cut(s)	291, 786
BsoBI	CYCGRG	2 cut(s)	13, 739
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	166, 249, 258
BspACI	CCGC	5 cut(s)	292, 422, 799, 925, 934
BspANI	GGCC	2 cut(s)	291, 786
BspCNI	CTCAG	1 cut(s)	841
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	725, 1032
BspLI	GGNNCC	3 cut(s)	98, 815, 816
BspPI	GGATC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	925
BsrI	ACTGG	3 cut(s)	340, 552, 912
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	166, 249, 258
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	8 cut(s)	112, 178, 187, 224, 306, 318, 513, 700
Bst6I	CTCTTC	2 cut(s)	867, 1049
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	209, 289, 1019
BstDEI	CTNAG	4 cut(s)	536, 849, 938, 1071
BstF5I	GGATG	2 cut(s)	662, 801
BstFNI	CGCG	2 cut(s)	725, 1032
BstHHI	GCGC	3 cut(s)	727, 840, 1034
BstKTI	GATC	3 cut(s)	169, 252, 261
BstMAI	GTCTC	2 cut(s)	736, 898
BstMBI	GATC	3 cut(s)	166, 249, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	3 cut(s)	412, 562, 775
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	3 cut(s)	174, 186, 648
BstUI	CGCG	2 cut(s)	725, 1032
BstV1I	GCAGC	1 cut(s)	970
BstV2I	GAAGAC	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	291, 786
BtsCI	GGATG	2 cut(s)	662, 801
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	2 cut(s)	314, 607
Cac8I	GCNNGC	3 cut(s)	209, 289, 1019
CaiI	CAGNNNCTG	1 cut(s)	907
CfoI	GCGC	3 cut(s)	727, 840, 1034
Cfr13I	GGNCC	2 cut(s)	97, 814
Csp6I	GTAC	3 cut(s)	82, 412, 701
CviAII	CATG	6 cut(s)	409, 559, 625, 678, 772, 841
CviQI	GTAC	3 cut(s)	82, 412, 701
DdeI	CTNAG	4 cut(s)	536, 849, 938, 1071
DpnI	GATC	3 cut(s)	168, 251, 260
DpnII	GATC	3 cut(s)	166, 249, 258
DraI	TTTAAA	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	867, 1049
EarI	CTCTTC	2 cut(s)	867, 1049
Eco147I	AGGCCT	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	97, 814
Eco57I	CTGAAG	1 cut(s)	598
Eco72I	CACGTG	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	938
Eco88I	CYCGRG	2 cut(s)	13, 739
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	708
EcoT22I	ATGCAT	2 cut(s)	26, 441
FaeI	CATG	6 cut(s)	412, 562, 628, 681, 775, 844
FaqI	GGGAC	3 cut(s)	558, 584, 827
FatI	CATG	6 cut(s)	408, 558, 624, 677, 771, 840
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	292, 984
FokI	GGATG	2 cut(s)	669, 788
Fsp4HI	GCNGC	2 cut(s)	292, 984
FspBI	CTAG	3 cut(s)	281, 500, 951
GlaI	GCGC	3 cut(s)	726, 839, 1033
GluI	GCNGC	2 cut(s)	292, 984
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	2 cut(s)	291, 786
HapII	CCGG	4 cut(s)	100, 373, 654, 805
HhaI	GCGC	3 cut(s)	727, 840, 1034
Hin1II	CATG	6 cut(s)	412, 562, 628, 681, 775, 844
Hin6I	GCGC	3 cut(s)	725, 838, 1032
HinP1I	GCGC	3 cut(s)	725, 838, 1032
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	5 cut(s)	143, 461, 572, 685, 1025
HpaII	CCGG	4 cut(s)	100, 373, 654, 805
HphI	GGTGA	4 cut(s)	128, 227, 320, 928
Hpy166II	GTNNAC	3 cut(s)	33, 328, 446
Hpy188I	TCNGA	6 cut(s)	263, 460, 518, 565, 963, 1005
Hpy188III	TCNNGA	4 cut(s)	100, 253, 485, 636
Hpy8I	GTNNAC	3 cut(s)	33, 328, 446
HpyAV	CCTTC	5 cut(s)	38, 42, 157, 535, 913
HpyCH4III	ACNGT	8 cut(s)	112, 178, 187, 224, 306, 318, 513, 700
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	24, 384, 439, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	4 cut(s)	536, 849, 938, 1071
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	6 cut(s)	412, 562, 628, 681, 775, 844
HspAI	GCGC	3 cut(s)	725, 838, 1032
KflI	GGGWCCC	1 cut(s)	814
Kpn2I	TCCGGA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	166, 249, 258
LmnI	GCTCC	2 cut(s)	740, 922
Lsp1109I	GCAGC	1 cut(s)	970
LweI	GCATC	4 cut(s)	33, 417, 426, 810
MaeI	CTAG	3 cut(s)	281, 500, 951
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	168, 251, 260
MbiI	CCGCTC	1 cut(s)	925
MboI	GATC	3 cut(s)	166, 249, 258
MboII	GAAGA	9 cut(s)	251, 259, 268, 358, 445, 604, 694, 884, 1036
MluCI	AATT	6 cut(s)	6, 264, 361, 747, 878, 999
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	22, 828, 833, 868, 904, 1052
Mph1103I	ATGCAT	2 cut(s)	26, 441
MroI	TCCGGA	1 cut(s)	99
MseI	TTAA	4 cut(s)	198, 365, 393, 1013
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	4 cut(s)	100, 373, 654, 805
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	2 cut(s)	725, 1032
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	3 cut(s)	166, 249, 258
NlaIII	CATG	6 cut(s)	412, 562, 628, 681, 775, 844
NlaIV	GGNNCC	3 cut(s)	98, 815, 816
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	26, 441
NspI	RCATGY	3 cut(s)	412, 562, 775
PaeR7I	CTCGAG	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	786
PciI	ACATGT	3 cut(s)	408, 558, 771
PfeI	GAWTC	4 cut(s)	143, 461, 685, 1025
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	2 cut(s)	293, 985
PleI	GAGTC	1 cut(s)	566
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	814
PscI	ACATGT	3 cut(s)	408, 558, 771
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	708
PspCI	CACGTG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	98, 815, 816
PspPI	GGNCC	2 cut(s)	97, 814
PspPPI	RGGWCCY	1 cut(s)	814
PspXI	VCTCGAGB	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	907
RsaI	GTAC	3 cut(s)	83, 413, 702
RsaNI	GTAC	3 cut(s)	82, 412, 701
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	198, 365, 393, 1013
SatI	GCNGC	2 cut(s)	292, 984
Sau3AI	GATC	3 cut(s)	166, 249, 258
Sau96I	GGNCC	2 cut(s)	97, 814
ScaI	AGTACT	1 cut(s)	702
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	4 cut(s)	33, 417, 426, 810
SfcI	CTRYAG	3 cut(s)	174, 186, 648
Sfr274I	CTCGAG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	97, 814
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	950
Sse9I	AATT	6 cut(s)	6, 264, 361, 747, 878, 999
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	5 cut(s)	292, 422, 799, 925, 934
SspMI	CTAG	3 cut(s)	281, 500, 951
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	8 cut(s)	112, 178, 187, 224, 306, 318, 513, 700
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	14
TasI	AATT	6 cut(s)	6, 264, 361, 747, 878, 999
TatI	WGTACW	2 cut(s)	411, 700
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	4 cut(s)	143, 461, 685, 1025
Tru1I	TTAA	4 cut(s)	198, 365, 393, 1013
Tru9I	TTAA	4 cut(s)	198, 365, 393, 1013
TscAI	CASTG	2 cut(s)	321, 607
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	983
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	156, 252, 1036
TspRI	CASTG	2 cut(s)	321, 607
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	2 cut(s)	97, 814
XapI	RAATTY	4 cut(s)	264, 361, 878, 999
XceI	RCATGY	3 cut(s)	412, 562, 775
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	3 cut(s)	281, 500, 951
ZrmI	AGTACT	1 cut(s)	702
Zsp2I	ATGCAT	2 cut(s)	26, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.