Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0025583

Physical Location & Seq

Genomic Coordinates Reverse (-)

149340 .. 150572

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atggttgcaagtgtaagcggagatctcggcctaaaggtttatcttactgatgatgacattgattccaccacggaaattgctagagttgaatgtcttgcatggaacagtcgagattcaaatcctattgccctgatggaagttgggacaagtcgtgatcagggagaaagtactgcaagcacaagcaactcttccagccaaatagctacagttgatgtttttgctattgaaattgcaaatccggttagaaccctagctctattgccccaaggagtttcaactactactgatgtgattaacagtatcacatcactcagtcgttcatatgacatggctgggacaggaattacctctcccgaccaagaagacgatgcaaacacgtcagttaaatcctccaccccaattagtctttcttcaaatgacacggatgggacaaagctgacctcttccgaccaagaagacgatgcaaacacgtcagttaagtcctccaccgcacttcaatcccttgcaattgaacatccaggtacatatccagctcttcaatggacccaaggagattcaaatcctcctactgaaatttccagtcctacttctccaaatgcacaagcaaaaatcggggcagggcacacatcttctgaccatggagatagagcaaacactccaattgttgaggttcagtcccgtgcaattacaaatgcatcaattctagctcttgcatggaccgaaggagattcaaatcctcctactgcaatttataacgacagtaatacttctccaaatgtggaagcagattccgaagcacaagcagcggaagcgaaagttgggacaaagcacacctttattcatagtcccaacccaagtcatgacgagggagacaagataccaagcacctcagttccagttggacccctgtcttttctctatgtaaggattattaaggctcgtaatcttgctgacattaataatgcaggaaatatttctctgtgtgttgaggcaacaatagagagctatatagggagtacaaagcagcacttcggagatgagaaaaatccagtatggaatcaggtcatttccttttcagtggatcagattaaatcatcagatttagttgttgcgattgcagataaagatcttgtggtgggcagggtaagctttaagttggatggtagcattccaagatggttagatgctgctcctctggccccaaaatggtacaggcttgtggaccagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

410

Amino Acids

43.46

Weight (kDa)

4.45

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	306 - 406	1.8e-09	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025583)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004465.1_g000009 Rmu_sc0004465.1_g000033 Rmu_sc0004465.1_g000036

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AciI	CCGC	3 cut(s)	18, 489, 806
AclWI	GGATC	1 cut(s)	1089
AcsI	RAATTY	1 cut(s)	573
AfaI	GTAC	4 cut(s)	169, 523, 1018, 1211
AfiI	CCNNNNNNNGG	1 cut(s)	1206
AflIII	ACRYGT	2 cut(s)	375, 468
AjiI	CACGTC	2 cut(s)	378, 471
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	4 cut(s)	391, 423, 801, 833
AluBI	AGCT	7 cut(s)	203, 254, 436, 533, 707, 1005, 1149
AluI	AGCT	7 cut(s)	203, 254, 436, 533, 707, 1005, 1149
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	1 cut(s)	1089
AoxI	GGCC	2 cut(s)	28, 1197
ApeKI	GCWGC	3 cut(s)	803, 1024, 1187
ApoI	RAATTY	1 cut(s)	573
AseI	ATTAAT	1 cut(s)	957
Asp700I	GAANNNNTTC	1 cut(s)	973
AspS9I	GGNCC	5 cut(s)	543, 717, 902, 1198, 1222
AvaII	GGWCC	4 cut(s)	543, 717, 902, 1222
BaeGI	GKGCMC	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	369, 462
BbvI	GCAGC	3 cut(s)	815, 1036, 1174
BccI	CCATC	4 cut(s)	127, 419, 1154, 1170
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	3 cut(s)	81, 251, 704
BfmI	CTRYAG	1 cut(s)	204
BglII	AGATCT	2 cut(s)	22, 1126
BisI	GCNGC	3 cut(s)	804, 1025, 1188
BlsI	GCNGC	3 cut(s)	805, 1026, 1189
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	4 cut(s)	543, 717, 902, 1222
BmgBI	CACGTC	2 cut(s)	378, 471
BmgT120I	GGNCC	5 cut(s)	543, 717, 902, 1198, 1222
BmiI	GGNNCC	3 cut(s)	545, 904, 1200
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	4 cut(s)	358, 451, 704, 1174
BoxI	GACNNNNGTC	1 cut(s)	907
BpiI	GAAGAC	2 cut(s)	369, 462
BsaBI	GATNNNNATC	4 cut(s)	117, 558, 732, 1125
BsaJI	CCNNGG	4 cut(s)	69, 265, 547, 637
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	1206
Bse1I	ACTGG	4 cut(s)	579, 896, 1049, 1225
Bse8I	GATNNNNATC	4 cut(s)	117, 558, 732, 1125
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	4 cut(s)	69, 265, 547, 637
BseGI	GGATG	3 cut(s)	430, 514, 1165
BseJI	GATNNNNATC	4 cut(s)	117, 558, 732, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	1206
BseMII	CTCAG	2 cut(s)	325, 903
BseNI	ACTGG	4 cut(s)	579, 896, 1049, 1225
BseRI	GAGGAG	1 cut(s)	1182
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	815, 1036, 1174
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	30, 1199
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	6 cut(s)	157, 349, 442, 661, 831, 835
BslI	CCNNNNNNNGG	1 cut(s)	1206
BsmAI	GTCTC	1 cut(s)	864
BsmFI	GGGAC	6 cut(s)	157, 349, 442, 661, 831, 835
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	2 cut(s)	30, 1199
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	22, 154, 1081, 1126
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	3 cut(s)	18, 489, 806
BspANI	GGCC	2 cut(s)	30, 1199
BspCNI	CTCAG	2 cut(s)	324, 902
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	3 cut(s)	545, 904, 1200
BspPI	GGATC	1 cut(s)	1089
BspQI	GCTCTTC	1 cut(s)	540
BsrI	ACTGG	4 cut(s)	579, 896, 1049, 1225
BssECI	CCNNGG	4 cut(s)	69, 265, 547, 637
BssMI	GATC	4 cut(s)	22, 154, 1081, 1126
BssT1I	CCWWGG	3 cut(s)	265, 547, 637
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	4 cut(s)	107, 208, 299, 761
Bst6I	CTCTTC	3 cut(s)	193, 448, 540
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	311, 889
BstDSI	CCRYGG	2 cut(s)	69, 637
BstF5I	GGATG	3 cut(s)	430, 514, 1165
BstKTI	GATC	4 cut(s)	25, 157, 1084, 1129
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	4 cut(s)	22, 154, 1081, 1126
BstMWI	GCNNNNNNNGC	4 cut(s)	803, 809, 1146, 1196
BstNI	CCWGG	1 cut(s)	519
BstPAI	GACNNNNGTC	1 cut(s)	907
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	815, 1036, 1174
BstV2I	GAAGAC	2 cut(s)	369, 462
BstX2I	RGATCY	2 cut(s)	22, 1126
BstYI	RGATCY	2 cut(s)	22, 1126
BsuRI	GGCC	2 cut(s)	30, 1199
BtgI	CCRYGG	2 cut(s)	69, 637
BtrI	CACGTC	2 cut(s)	378, 471
BtsCI	GGATG	3 cut(s)	430, 514, 1165
BtsIMutI	CAGTG	1 cut(s)	1083
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	859
Cfr13I	GGNCC	5 cut(s)	543, 717, 902, 1198, 1222
Csp6I	GTAC	4 cut(s)	168, 522, 1017, 1210
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	5 cut(s)	99, 328, 638, 714, 860
CviQI	GTAC	4 cut(s)	168, 522, 1017, 1210
DdeI	CTNAG	2 cut(s)	311, 889
DpnI	GATC	4 cut(s)	24, 156, 1083, 1128
DpnII	GATC	4 cut(s)	22, 154, 1081, 1126
Eam1104I	CTCTTC	3 cut(s)	193, 448, 540
EarI	CTCTTC	3 cut(s)	193, 448, 540
Eco130I	CCWWGG	3 cut(s)	265, 547, 637
Eco47I	GGWCC	4 cut(s)	543, 717, 902, 1222
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	3 cut(s)	265, 547, 637
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	3 cut(s)	265, 547, 637
FaeI	CATG	5 cut(s)	102, 331, 641, 717, 863
FalI	AAGNNNNNCTT	6 cut(s)	172, 204, 818, 850, 1013, 1045
FaqI	GGGAC	6 cut(s)	157, 349, 442, 661, 831, 835
FatI	CATG	5 cut(s)	98, 327, 637, 713, 859
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	804, 1025, 1188
FokI	GGATG	3 cut(s)	437, 501, 1172
Fsp4HI	GCNGC	3 cut(s)	804, 1025, 1188
FspBI	CTAG	3 cut(s)	81, 251, 704
GluI	GCNGC	3 cut(s)	804, 1025, 1188
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	30, 1199
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	5 cut(s)	102, 331, 641, 717, 863
HindIII	AAGCTT	1 cut(s)	1147
HinfI	GANTC	6 cut(s)	62, 113, 554, 728, 788, 1057
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	1222
Hpy188I	TCNGA	6 cut(s)	448, 634, 793, 1034, 1086, 1099
Hpy188III	TCNNGA	4 cut(s)	110, 152, 353, 860
Hpy8I	GTNNAC	1 cut(s)	1222
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	4 cut(s)	107, 208, 299, 761
HpyCH4IV	ACGT	2 cut(s)	377, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	803, 809, 1146, 1196
HpyF3I	CTNAG	2 cut(s)	311, 889
HpySE526I	ACGT	2 cut(s)	377, 470
Hsp92II	CATG	5 cut(s)	102, 331, 641, 717, 863
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	22, 154, 1081, 1126
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	1195
Lsp1109I	GCAGC	3 cut(s)	815, 1036, 1174
LweI	GCATC	4 cut(s)	358, 451, 704, 1174
MaeI	CTAG	3 cut(s)	81, 251, 704
MaeII	ACGT	2 cut(s)	377, 470
MalI	GATC	4 cut(s)	24, 156, 1083, 1128
MboI	GATC	4 cut(s)	22, 154, 1081, 1126
MboII	GAAGA	7 cut(s)	180, 374, 402, 435, 467, 527, 621
MfeI	CAATTG	2 cut(s)	507, 660
MflI	RGATCY	2 cut(s)	22, 1126
MhlI	GDGCHC	1 cut(s)	624
MmeI	TCCRAC	3 cut(s)	471, 880, 1137
Mph1103I	ATGCAT	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	973
MseI	TTAA	7 cut(s)	294, 384, 477, 933, 957, 1089, 1152
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	2 cut(s)	507, 660
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	803, 809, 1146, 1196
NcoI	CCATGG	1 cut(s)	637
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	4 cut(s)	22, 154, 1081, 1126
NlaIII	CATG	5 cut(s)	102, 331, 641, 717, 863
NlaIV	GGNNCC	3 cut(s)	545, 904, 1200
NmeAIII	GCCGAG	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	697
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	1167
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	6 cut(s)	62, 113, 554, 728, 788, 1057
PkrI	GCNGC	3 cut(s)	805, 1026, 1189
PshAI	GACNNNNGTC	1 cut(s)	907
PshBI	ATTAAT	1 cut(s)	957
PsiI	TTATAA	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	545, 904, 1200
PspPI	GGNCC	5 cut(s)	543, 717, 902, 1198, 1222
PsuI	RGATCY	2 cut(s)	22, 1126
RsaI	GTAC	4 cut(s)	169, 523, 1018, 1211
RsaNI	GTAC	4 cut(s)	168, 522, 1017, 1210
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	7 cut(s)	294, 384, 477, 933, 957, 1089, 1152
SatI	GCNGC	3 cut(s)	804, 1025, 1188
Sau3AI	GATC	4 cut(s)	22, 154, 1081, 1126
Sau96I	GGNCC	5 cut(s)	543, 717, 902, 1198, 1222
ScaI	AGTACT	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	4 cut(s)	358, 451, 704, 1174
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	4 cut(s)	543, 717, 902, 1222
SsiI	CCGC	3 cut(s)	18, 489, 806
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	3 cut(s)	81, 251, 704
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	3 cut(s)	265, 547, 637
TaaI	ACNGT	4 cut(s)	107, 208, 299, 761
TaiI	ACGT	2 cut(s)	380, 473
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	734
TatI	WGTACW	2 cut(s)	167, 1016
TfiI	GAWTC	6 cut(s)	62, 113, 554, 728, 788, 1057
Tru1I	TTAA	7 cut(s)	294, 384, 477, 933, 957, 1089, 1152
Tru9I	TTAA	7 cut(s)	294, 384, 477, 933, 957, 1089, 1152
TscAI	CASTG	1 cut(s)	1083
TseI	GCWGC	3 cut(s)	803, 1024, 1187
TspDTI	ATGAA	2 cut(s)	309, 830
TspGWI	ACGGA	2 cut(s)	86, 437
TspRI	CASTG	1 cut(s)	1083
VpaK11BI	GGWCC	4 cut(s)	543, 717, 902, 1222
VspI	ATTAAT	1 cut(s)	957
XapI	RAATTY	1 cut(s)	573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	973
XspI	CTAG	3 cut(s)	81, 251, 704
ZrmI	AGTACT	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.