Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004492.1

Orthogroup ID

OG0031308

Physical Location & Seq

Genomic Coordinates Reverse (-)

402 .. 1004

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004492.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggtgccatcagcctacttggatcaacaaattgatggggacaaagcttatggagccagtctttgggagccaactacagacaagtgcatcaaatggctggataaaaaaccacctcaaagtgtgatatacatatcttttggaagcatggcaaacattgcagcaaaacaggttgaagaaatcgcatggggcttgaaggtaagtgatcaacacttcctctgggttgtgaaagagtccgagaacaaattgcctgatgagttcctgaacacaataggcgaaacagggttggtggtaacatggtgcaaccaactagaggtactagcacatccagctgtgggatgttttataacgcactgcggatggaattccacgttggagggattgggcctcggcgtgccgatggtgggagtgcctcagtggagtgatcagccaacgaatgccaagtttgtggaggagttgtggggggttggagtgagagttaagaagaatgaagaggggcttgtgacgaaggacgagttagagatgtgtataagggaagtcatggtgggagaaagaagtgatcatattaaaaggaatgtcggaagtcatggtgggagaaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

5.41

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031308)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004492.1_g000001
rosa_samantha	Rh7DG026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	63
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	4 cut(s)	63, 310, 332, 401
AgsI	TTSAA	2 cut(s)	173, 193
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	2 cut(s)	47, 329
AluI	AGCT	2 cut(s)	47, 329
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	4 cut(s)	16, 29, 351, 391
BclI	TGATCA	3 cut(s)	202, 421, 556
BfaI	CTAG	2 cut(s)	308, 317
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	6, 55, 69
BmsI	GCATC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	440, 459, 470, 489
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 310, 332, 401
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	3 cut(s)	322, 341, 362
BseLI	CCNNNNNNNGG	4 cut(s)	63, 310, 332, 401
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	4 cut(s)	63, 310, 332, 401
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	22, 202, 421, 556
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	6, 55, 69
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	22, 202, 421, 556
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	322, 341, 362
BstKTI	GATC	4 cut(s)	25, 205, 424, 559
BstMBI	GATC	4 cut(s)	22, 202, 421, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 155, 326
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	322, 341, 362
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	349, 419
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	145, 183, 294, 538, 584
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	4 cut(s)	24, 204, 423, 558
DpnII	GATC	4 cut(s)	22, 202, 421, 556
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	361
FaeI	CATG	5 cut(s)	148, 186, 297, 541, 587
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	144, 182, 293, 537, 583
FbaI	TGATCA	3 cut(s)	202, 421, 556
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	3 cut(s)	309, 348, 369
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	308, 317
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	384
Hin1II	CATG	5 cut(s)	148, 186, 297, 541, 587
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	235, 578
Hpy188III	TCNNGA	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	187, 499
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	87, 158, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 155, 326
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	148, 186, 297, 541, 587
Ksp22I	TGATCA	3 cut(s)	202, 421, 556
Kzo9I	GATC	4 cut(s)	22, 202, 421, 556
LmnI	GCTCC	2 cut(s)	53, 67
LpnPI	CCDG	8 cut(s)	70, 83, 152, 202, 261, 264, 272, 339
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	308, 317
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	289, 499
MalI	GATC	4 cut(s)	24, 204, 423, 558
MboI	GATC	4 cut(s)	22, 202, 421, 556
MboII	GAAGA	3 cut(s)	185, 493, 500
MluCI	AATT	3 cut(s)	30, 242, 361
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	351, 445, 556
MnlI	CCTC	8 cut(s)	123, 224, 304, 367, 395, 420, 442, 484
MseI	TTAA	2 cut(s)	477, 564
MspA1I	CMGCKG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	3 cut(s)	53, 155, 326
NdeII	GATC	4 cut(s)	22, 202, 421, 556
NlaIII	CATG	5 cut(s)	148, 186, 297, 541, 587
NlaIV	GGNNCC	3 cut(s)	6, 55, 69
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	6, 55, 69
PspPI	GGNCC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	477, 564
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	4 cut(s)	22, 202, 421, 556
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	239
SetI	ASST	7 cut(s)	49, 115, 171, 198, 315, 331, 371
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	30, 242, 361
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	2 cut(s)	308, 317
TaiI	ACGT	1 cut(s)	371
TasI	AATT	3 cut(s)	30, 242, 361
Tru1I	TTAA	2 cut(s)	477, 564
Tru9I	TTAA	2 cut(s)	477, 564
TscAI	CASTG	2 cut(s)	356, 419
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	356, 419
Van91I	CCANNNNNTGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	2 cut(s)	308, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.